BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895660
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03298.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 665 0.0
> AT4G03298.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 7 Blast hits
to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr4:1446681-1447718 FORWARD LENGTH=708
Length=708
Score = 665 bits (360), Expect = 0.0
Identities = 574/672 (85%), Gaps = 36/672 (5%)
Strand=Plus/Plus
Query 1 ATGGCGACAACCATCGATCGTATCTCTCGTACATTCCTAGCTTCAAGGAATCAAAGT-C- 58
|||| |||||||| |||||||||||||| ||||||||| || |||||||| |||||| |
Sbjct 9 ATGGTGACAACCACCGATCGTATCTCTCTTACATTCCTGGCCTCAAGGAACCAAAGTCCA 68
Query 59 -CATACCTAAACAAACACTTGAAACCAATAAG-GT-TG-TGTTTCTCCAACTTTGGTTCA 114
|||| ||||| ||| |||||||||||| ||| | || |||||||||||||||||||||
Sbjct 69 TCATATCTAAAGAAATACTTGAAACCAACAAGCTTATGTTGTTTCTCCAACTTTGGTTCA 128
Query 115 TCATTCCC---A--AA-A-T--C----A-----AGTTTGCAAAGAAAGATTGTTCCTCTC 156
||||||| | || | | | | ||||||||||||||||||||||||||
Sbjct 129 CCATTCCCAAAATCAAGATTGACAATAATCTCGAGTTTGCAAAGAAAGATTGTTCCTCTT 188
Query 157 CTAGATGTGGACTTTGcatcatcatcatcatcaatcaACCATATATTTGTTCATGACCGG 216
|||||||||||| |||||||| | ||||| | ||||||| ||||||||||||||||||
Sbjct 189 CTAGATGTGGACGTTGCATCA-C--CATCACCTTTCAACCAAATATTTGTTCATGACCGG 245
Query 217 AGGCTAACAAAGCCTGTGAGAACATTGAGAGCATCTAAAGAT-GAGAACTCGAT-CC--C 272
|||||||||||||||||||| ||| ||||||||||||||||| || |||||||| || |
Sbjct 246 AGGCTAACAAAGCCTGTGAGTACACTGAGAGCATCTAAAGATGGA-AACTCGATCCCATC 304
Query 273 AGGAGCAGCAAACGTATTGCTAAAGAGACTTTTCTTGACTTTTAACATCATCATGGGAAT 332
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 305 AATAGCAGCAAACGTATTGCTAAAGAGACTTTTCTTGACTTTTAACATAATCATTGGAAT 364
Query 333 GCTTCTGTTGGCAATTAGCGAGTTCTTCCCATTGATTGAACTCAATAGA-CGGTTAGGGA 391
||||||||| ||||||| ||| ||||||||||||||| |||||||| || ||||||||||
Sbjct 365 GCTTCTGTTCGCAATTAACGACTTCTTCCCATTGATTAAACTCAAT-GAACGGTTAGGGA 423
Query 392 TGTATTTTATGATGGTGTTCGGGTTAAGTTGCATATGGTGCCTTGTGGACAGTTTATTGT 451
||| | |||||||||||| | || |||||||||||||||||||| ||||| || |||
Sbjct 424 TGTCCTATATGATGGTGTTATGTTTTAGTTGCATATGGTGCCTTGTTGACAGCTTGGTGT 483
Query 452 GCGTAATGGCAGGAATCTATCGTCTGATTCATGTAATCATTT-CCACATTCAATTGGCCG 510
|||||||||||| |||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 484 TCGTAATGGCAGGGATCTATCGTCTGATTCATGTAATC-TGTGCCACATTCAATTGGCCG 542
Query 511 GTTTTGAGAACGTTGCTCTACTACTCTTTCATTGTTTTGAAAGAATTACTTGTTTTTTAT 570
||||||||| | ||| | |||||||||||| ||||||||||||||||| || ||||||||
Sbjct 543 GTTTTGAGATCCTTGTTTTACTACTCTTTCGTTGTTTTGAAAGAATTATTTCTTTTTTAT 602
Query 571 TGCAAGCTAAGAATTTGTGAATTTTGTTTGGGCATTTTTAGTCTTGTAATGATTCTTTCT 630
|| |||||||||||||| |||||||| |||||||| | |||| |||| || || |||||
Sbjct 603 TGTAAGCTAAGAATTTGCGAATTTTGCTTGGGCATGTGTAGTTTTGTCATAATGGTTTCT 662
Query 631 GATTTTAAATAA 642
|||||||||
Sbjct 663 TCGTTTAAATAA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5