BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895676
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03140.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1458 0.0
AT4G03150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 86.1 5e-16
> AT4G03140.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:1392121-1393842 FORWARD LENGTH=1282
Length=1282
Score = 1458 bits (789), Expect = 0.0
Identities = 867/905 (96%), Gaps = 4/905 (0%)
Strand=Plus/Plus
Query 1 ATGTTTCAGATTGGAAAAAACGCATTATAT-AAGAATGTGAGCAAGAACTTCCTTATCAA 59
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 200 ATGTTTCAGATTGGAAAAAACGCATTAT-TCAAGAATGTGAGCAAGAACTTCCTTATCAA 258
Query 60 CGGAATCTCCTCTTCCGCATCATCTCATTCAAGTTCAAGGAAGCTAGAAGGTAAAGTAGC 119
||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 259 GGGAATATCCTCATCCTCATCATCTCATTCAACTTCAAGGAAGCTAGAAGGTAAAGTAGC 318
Query 120 ACTCATCACAGGAGGAGCAAGTGGGATTGGCAAAGCAACCGCCGGAGAATTCATCAGCCA 179
||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 319 ACTCATCACTGGAGGAGCAAGTGGGATTGGCAAAGCAACAGCCGGAAAATTCATCAGTCA 378
Query 180 TGGAGCCAAAGTTATCATTGCCGATATCCAACCACAGATTGGGCGAGAAACCGCGCAAGA 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 379 TGGAGCCAAAGTTATCATTGCCGATATCCAACCGCAGATTGGGCGAGAAACCGAGCAAGA 438
Query 240 ACTCGGTCCCAG-TGCTGCTTATTTCCCATGCGATGTGACCAAAGAATCAGACATTGCTA 298
|||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 439 ACTCGGTCCCAGTTG-TGCTTACTTCCCATGCGATGTGACCAAAGAATCAGACATTGCTA 497
Query 299 ACGCAGTTGACTTTGCTGTCTCGATCCATACAAAGCTCGACATTATGTACAACAATGCTG 358
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 498 ACGCAGTTGACTTCGCTGTCTCGCTCCATACAAAGCTCGACATTATGTACAACAATGCTG 557
Query 359 GTATTCCCTGCAAAACGCCTCCTAGTATCGTTGATCTTGATCTCAATGTTTTTGACAAGG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 558 GTATTCCCTGCAAAACGCCTCCTAGTATCGTTGATCTTGATCTCAATGTTTTCGACAAGG 617
Query 419 TAATCAACACAAATGTCCGTGGAGTCATCGCAGGAATCAAACATGCTGCTCGTGTGATGA 478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 618 TAATCAACACAAATGTCCGTGGAGTCATGGCAGGAATCAAACATGCTGCTCGTGTGATGA 677
Query 479 TCCCACATAATTCCGGATCCATCATTTGCGCAGGGAGTGTCACGGGGATGATGGGCGGTT 538
|||| | ||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 678 TCCCGCGTAACTCTGGATCCATCATTTGTGCAGGGAGTGTCACGGGGATGATGGGCGGTT 737
Query 539 TAGCACAACATACTTACAGCGTCTCAAAATCCGCTGTTATCGGAATTGTAAGATCAACAG 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TAGCCCAACATACTTACAGCGTCTCAAAATCCGCTGTTATCGGAATTGTAAGATCAACAG 797
Query 599 CTTCAGAACTATGCAAGCACAAGATCAGGGTCAACTGCATCTCTCCTTTTGCAATCACAA 658
||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||
Sbjct 798 CTTCAGAACTATGCAAGCACAGGATCCGGGTCAACTGCATTTCTCCTTTTGCGATCACAA 857
Query 659 CGTCATTCGTGATGGATGAGATGCGACAGATTTACCCCGGTGTTGATGACTCAAGGCTGA 718
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 CATCATTCGTGATGGATGAGATGCGACAGATTTACCCCGGTGTTGATGACTCAAGGCTGA 917
Query 719 TCCAGATAGTGCAGAGCACAGGAGTGTTAGACGGAGAGGTTTGTGAACCAACCGACGTAG 778
|||||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 918 TCCAGATAGTGCAGAGTACAGGAGTGTTAAATGGAGAGGTTTGTGAACCAACCGATGTAG 977
Query 779 CTAATGCAGCGGTTTATCTTGCTTCCGATGATTCAAAGTATGTAAATGGGCATAATCTGG 838
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 978 CTAATGCAGCGGTGTATCTCGCTTCCGATGATTCAAAGTATGTAAATGGGCATAATCTGG 1037
Query 839 TGGTAGATGGAGGATTCACAAGTGTAAAGACGTTAGATTTCCCTGCACCTGACCAAGTGA 898
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TGGTAGATGGAGGATTCACAACTGTAAAGACGTTAGATTTCCCTGCACCTGACCAAGTGA 1097
Query 899 AGTAA 903
|||||
Sbjct 1098 AGTAA 1102
> AT4G03150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1393614-1394574
REVERSE LENGTH=720
Length=720
Score = 86.1 bits (46), Expect = 5e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 855 CACAAGTGTAAAGACGTTAGATTTCCCTGCACCTGACCAAGTGAAGTAA 903
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CACAACTGTAAAGACGTTAGATTTCCCTGCACCTGACCAAGTGAAGTAA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5