BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895679
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03115.1 | Symbols: | Mitochondrial substrate carrier famil... 1382 0.0
> AT4G03115.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr4:1382438-1385485 REVERSE LENGTH=1873
Length=1873
Score = 1382 bits (748), Expect = 0.0
Identities = 856/908 (94%), Gaps = 8/908 (1%)
Strand=Plus/Plus
Query 21 AGTTGTTGAAGGGAAGGAAGAACTGAGGAAG-CATCAGAATCTGCTTCCGCCGTTTTCAA 79
||||||||||||||| |||||| |||||||| || ||||||||| |||||||||||||||
Sbjct 39 AGTTGTTGAAGGGAATGAAGAATTGAGGAAGCCA-CAGAATCTGATTCCGCCGTTTTCAA 97
Query 80 AGGTGGTGTCTCATTTTGGCACTAGTGGATTGTCCGTTGCGTTAGCCACCGGCGTCACTC 139
||||||||||||||||||||| ||| ||| | ||||| || || ||||| ||||| ||||
Sbjct 98 AGGTGGTGTCTCATTTTGGCATTAGCGGAATCTCCGTCGCATTGGCCACTGGCGTGACTC 157
Query 140 ATCCTCTCGATGTAGTGAAAGTAAGATTGCAGATGCAGCATGTCGGCCAAAGAGGTCCTT 199
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 158 ATCCTCTCGATGTAGTGAAAGTGAGATTGCAGATGCAGCATGTCGGCCAAAGAGGTCCGT 217
Query 200 TAATTGGAATGACTGGAATCTTTGTTCAACTAATGAAGAATGAAGGGTTTAGGTCATTAT 259
||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||
Sbjct 218 TAATTGGAATGACTGGAATCTTTCTTCAACTGATGAAGAATGAAGGGCGTAGGTCTTTAT 277
Query 260 ACTTGGGGTTGACTCCTGCTCTTACTAGATCAGTGCTTTACGGAGGTCTCAGATTGGGAT 319
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 278 ACTTGGGGTTGACTCCTGCTCTCACTAGATCAGTGCTTTACGGAGGTCTTAGATTGGGAT 337
Query 320 TATATGAACCCACCAAGGTTTCTTTTGATTGGGCATTTGGATCTACCAATGTCTTGGTTA 379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 338 TATATGAACCCACCAAGGTTTCTTTTGATTGGGCATTTGGATCTACCAATGTCTTGGTCA 397
Query 380 AGATTGCCTCAGGCGCATTCGCTGGGGCGTTTTCCACAGCATTAACTAACCCCGTTGAAG 439
|||| || |||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 398 AGATAGCATCAGGCGCATTCGCCGGGGCGTTTTCCACTGCATTAACTAACCCTGTTGAAG 457
Query 440 TTGTTAAGGTAAGGTTGCAGATGAATCCAAACGCAGTTCCAATTGCAGAAGTGCGGGAAA 499
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 458 TTGTTAAGGTAAGGTTGCAGATGAATCCAAACGCAGTTCCCATTGCAGAAGTGCGGGAAA 517
Query 500 TAGTCTCTAAAGAAGGCATAGGAGCTTTATGGAAAGGAGTTGGTCCTGCCATGGTTAGAG 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TAGTCTCTAAAGAAGGCATAGGAGCTTTATGGAAAGGAGTTGGTCCTGCCATGGTTAGAG 577
Query 560 CTGCCGCACTAACTGCCTCACAGCTTGCAACATATGATGAAACCAAACGGATTCTGGTTA 619
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 578 CTGCAGCACTAACTGCCTCACAGCTTGCAACATATGATGAAGCCAAACGGATTCTGGTTA 637
Query 620 AACGAACTTCTTTAGAAGAAGGGTTTCAACTTCATTTGTG-T---GTG-G-TTGCAGGTG 673
|||||||||||||||||||||||||||| ||||||||||| | ||| | ||||||||
Sbjct 638 AACGAACTTCTTTAGAAGAAGGGTTTCATCTTCATTTGTGCTCAAGTGTGGTTGCAGGTT 697
Query 674 TCGTAAGCACACTGATAACGGCGCCCATAGACATGATTAAAACACGCTTGATGTTGCAGC 733
| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 698 TAGTAAGCACACTGATAACCGCACCCATGGACATGATTAAAACCCGCTTGATGTTGCAGC 757
Query 734 AAGGTTCTGAAAGCACCAGAATCTACAGAAACGGGTTTCATTGCGGTTACAAGGTTGTTC 793
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 758 AAGGTTCTGAAAGCACCAAAACCTACAGAAACGGGTTTCATTGCGGTTACAAGGTTGTTC 817
Query 794 GCAAAGAAGGACCTCTGGCACTTTACAAAGGTGGCTTTGCGATTTTTGCACGGCTCGGGC 853
|||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 818 GCAAAGAAGGTCCTCTGGCACTTTACAAAGGAGGCTTTGCAATTTTCGCACGGCTCGGGC 877
Query 854 CACAAACGATGATCACGTTCATACTATGCGAGAAGCTAAGATCACTCGCTGGACTTCACA 913
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 878 CACAAACGATGATCACGTTCATACTATGCGAGAAGCTTAGATCACTCGCTGGACTTCACA 937
Query 914 CAATGTAG 921
||||||||
Sbjct 938 CAATGTAG 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5