BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895736
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02600.1 | Symbols: MLO1, ATMLO1 | Seven transmembrane MLO f... 2615 0.0
> AT4G02600.1 | Symbols: MLO1, ATMLO1 | Seven transmembrane MLO
family protein | chr4:1143999-1147409 FORWARD LENGTH=1976
Length=1976
Score = 2615 bits (1416), Expect = 0.0
Identities = 1530/1585 (97%), Gaps = 8/1585 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCCCGGAGGAGAAGGGATGTCGCTTGAATTCACTCCGACGTGGGTCGTCGCCGCA 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 143 ATGGGTCACGGAGGAGAAGGGATGTCGCTTGAATTCACTCCGACGTGGGTCGTCGCCGGA 202
Query 61 GTTTGTACGGTAATCGTCGCGATTTCTCTGGCGGTGGAGCGTTTGCTTCACTATTTCGGT 120
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 203 GTTTGTACGGTCATCGTCGCGATTTCACTGGCGGTGGAGCGTTTGCTTCACTATTTCGGT 262
Query 121 ACTGTTCTTAAGAAGAAGAAGCAAAAACCTCTTTACGAAGCCCTTCAAAAGGTTAAAGAA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 263 ACTGTTCTTAAGAAGAAGAAGCAAAAACCCCTTTACGAAGCCCTTCAAAAGGTTAAAGAA 322
Query 181 GAGCTGATGTTGTTAGGGTTCATATC-CTTGTTACTGACGGTATTCCAAGGACTCATTTC 239
|||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||
Sbjct 323 GAGCTGATGTTGTTAGGGTTTATATCGC-TGTTACTGACGGTATTCCAAGGGCTCATTTC 381
Query 240 CAAATTCTGTGTCAAAGAAGATGTGCTTCTGCATATGCTTCCATGTTCACTTGATTCAAG 299
|||||||||||| |||||| |||||||| ||||||||||||||||||| || ||||||||
Sbjct 382 CAAATTCTGTGTGAAAGAAAATGTGCTTATGCATATGCTTCCATGTTCTCTCGATTCAAG 441
Query 300 ACGAGAAGCTGAGGCAAATGAACATAAAAACGTTACAGCTAAAGAACATTTTCAGACTTT 359
||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 442 ACGAGAAGCTGGGGCAAGTGAACATAAAAACGTTACAGCAAAAGAACATTTTCAGACTTT 501
Query 360 TCTCCCTATTGTTGGAACCACTAGGCGTCTACTGGCTGAAAATGCTGCTGCTG-AAGCTG 418
| | ||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||
Sbjct 502 TTTACCTATTGTTGGAACCACTAGGCGTCTACTTGCTGAACATGCTGCTG-TGCAAGTTG 560
Query 419 GTTATTGTAGCCAAAAGCATAAAGTACCATTGCTTTCGGTTGAGGCATTGCACCATCTAC 478
|||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 561 GTTACTGTAGCGAAAAGGGTAAAGTACCATTGCTTTCGCTTGAGGCATTGCACCATCTAC 620
Query 479 ATATCTTCATCTTCGTCCTCGCCATATCCCATGTGACATTCTGTGTCCTTACCGTGGTTT 538
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 621 ATATTTTCATCTTCGTCCTCGCCATATCCCATGTGACATTCTGTGTCCTTACCGTGATTT 680
Query 539 TTGGAAGCACAAGGATTCACCAATGGAAGAAATGGGAGGATTCGATCGCAGATGAGAAGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TTGGAAGCACAAGGATTCACCAATGGAAGAAATGGGAGGATTCGATCGCAGATGAGAAGT 740
Query 599 TTGACCCCGAAACAGCTCTCAGGAAAAGAAGGGTCACTCATGTACACAACCATGCTTTTA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTGACCCCGAAACAGCTCTCAGGAAAAGAAGGGTCACTCATGTACACAACCATGCTTTTA 800
Query 659 TTAAAGAGCACTTTCTTGGTATTGGCAAAGATTCAGTCATCCTCGGATGGACGCAATCCT 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TTAAAGAGCATTTTCTTGGTATTGGCAAAGATTCAGTCATCCTCGGATGGACGCAATCCT 860
Query 719 TTTTCAAGCAATTCTATGGAT-CAGTGACGAAATCAGATTACGTGACTTTACGTCTTGGT 777
|| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 861 TTCTCAAGCAATTCTATG-ATTCTGTGACGAAATCAGATTACGTGACTTTACGTCTTGGT 919
Query 778 TTCATTATGACACATTGTAAGGGAAACCCCAAGCTCAATTTCCACAAGTATATGATGCGC 837
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 920 TTCATTATGACACATTGTAAGGGAAACCCCAAGCTTAATTTCCACAAGTATATGATGCGC 979
Query 838 GCTCTAGAGGATGATTTCAAACAAGTTGTTGGTATTAGTTGGTATCTTTGGATCTTTGTC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 GCTCTAGAGGATGATTTCAAACAAGTTGTTGGTATTAGTTGGTATCTTTGGATCTTTGTC 1039
Query 898 GTCATCTTCCTGCTGCTAAATGTTAACGGATGGCACACATATTTCTGGATAGCATTTATT 957
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GTCATCTTTTTGCTGCTAAATGTTAACGGATGGCACACATATTTCTGGATAGCATTTATT 1099
Query 958 CCCTTTGCTCTGCTTCTTGCTGTGGGAACAAAGTTGGAGCATGTGATTGCACAGTTAGCA 1017
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 CCCTTTGCTTTGCTTCTTGCTGTGGGAACAAAGTTGGAGCATGTGATTGCACAGTTAGCT 1159
Query 1018 CATGAAGTTGCAGAGAAACATGTAGCCATTGAAGGAGACTTAGTGGTGAAACCCTCTGAT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1160 CATGAAGTTGCAGAGAAACATGTAGCCATTGAAGGAGACTTAGTGGTGAAACCCTCAGAT 1219
Query 1078 GAGCATTTCTGGTTCAGCAAACCTCAAATTGTTCTCTACTTGATCCATTTTATCCTCTTC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 GAGCATTTCTGGTTCAGCAAACCTCAAATTGTTCTCTACTTGATCCATTTTATCCTCTTC 1279
Query 1138 CAGAATGCTTTTGAGATTGCGTTTTTCTTTTGGATTTGGGTTACATATGGCTTCGACTCG 1197
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1280 CAGAATGCTTTTGAGATTGCGTTTTTCTTTTGGATTTGGGTTACATACGGCTTCGACTCG 1339
Query 1198 TGCATTATGGGACAGGTGAGATACATTGTTCCAAGATTGGTTATTGGGGTCTTCATCCAA 1257
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1340 TGCATTATGGGACAGGTGAGATACATTGTTCCAAGATTGGTTATCGGGGTCTTCATTCAA 1399
Query 1258 GTGCTTTGCAGTTACAGTACACTGCCTCTTTACGCCATTGTCTCACAGATGGGAAGTAGC 1317
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1400 GTGCTTTGCAGTTACAGTACACTGCCTCTTTACGCCATCGTCTCACAGATGGGAAGTAGC 1459
Query 1318 TTCAAGAAAGCTATATTCGAGGAGAATGTGCAGGTTGGTCTTGTAGGTTGGGCACAGAAA 1377
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1460 TTCAAGAAAGCTATATTCGAGGAGAATGTGCAGGTTGGTCTTGTTGGTTGGGCACAGAAA 1519
Query 1378 GTGAAGCAAAAGAGAGACGTAAAAGCTGCAGCTAGTAATGGAAACGAAGGAAGCTCTCAG 1437
||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1520 GTGAAACAAAAGAGAGACCTAAAAGCTGCAGCTAGTAATGGAGACGAAGGAAGCTCTCAG 1579
Query 1438 GctggtcctggtcctgattctggttctggttctgttcctgctgctggtcctggtGCAGGT 1497
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1580 GCTGGTCCTGGTCCTGATTCTGGTTCTGGTTCTGCTCCTGCTGCTGGTCCTGGTGCAGGT 1639
Query 1498 TTTGCAGGAATTCAGCTCGGCAG-GTTAACAAGAAACAACGCAGGGGACACAAACAATGA 1556
|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 1640 TTTGCAGGAATTCAGCTCAGCAGAGT-AACAAGAAACAACGCAGGGGACACAAACAATGA 1698
Query 1557 GATTACACCTGAGCATAACAACTGA 1581
|||||||||||| ||||||||||||
Sbjct 1699 GATTACACCTGATCATAACAACTGA 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5