BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895753
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02450.1 | Symbols: | HSP20-like chaperones superfamily pro... 728 0.0
> AT4G02450.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr4:1073753-1075893 REVERSE LENGTH=1088
Length=1088
Score = 728 bits (394), Expect = 0.0
Identities = 445/470 (95%), Gaps = 2/470 (0%)
Strand=Plus/Plus
Query 1 ATGAGTCGTCATCCTGAAGTGAAGTGGGCTGAGACTACCGAGAAGATTTTTCTCACTGTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 129 ATGAGTCGTCATCCTGAAGTGAAGTGGGCTGAGACTACCGAGAAGATTTTCCTCACTGTA 188
Query 61 GTATTGGCAGATACTAAGGATACCAAGGTTAATCTAGATCCAGAAGGAGTGTTTGATTTC 120
||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 189 GTATTAGCTGATACTAAGGATACCAAGGTTAACCTAGACCCAGAAGGAGTCTTTGATTTC 248
Query 121 TCTGCGAAAGTTGGTCCAGAAAACCACGTTTATGAGCTCAAACTCGAACTT-CACGATAA 179
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 249 TCTGCGAAAGTTGGTCCAGAAAACCACGTTTATGAGCTCAAACTGGAACTTGC-CGATAA 307
Query 180 AGTCAATGTTGAGGAAAGCAAAATCAACATTGGTGAAAGAAGCATATTCTGCATAATAGA 239
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 308 AGTCAATGTTGAGGAAAGCAAAATCAACATTGGAGAGAGAAGCATATTCTGCATAATTGA 367
Query 240 GAAAGCAGAGCCAGAAAGGTGGAATAAGCTACTCCGTGTGAAGAAGCCACCACACTATGT 299
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 368 GAAAGCAGAGCCGGAAAGGTGGAATAAGCTACTCCGTGTGAAGAAGCCCCCACACTATGT 427
Query 300 CAAGGTGGATTGGGACAAGTGGGTTGATGAGGACGATGAAGGCAGTGCTGGTGCCGCAGA 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 CAAGGTTGATTGGGACAAGTGGGTTGATGAGGACGATGAAGGCAGTGCTGGTGCCGCAGA 487
Query 360 Tatggatatgggaggaatggaaggaatgggcggaatgggcggaatgggcggaatgggcgg 419
||||||||||| |||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 488 TATGGATATGGCAGGAATGGAAGGAATGGGAGGAATGGGAGGCATGGGCGGCATGGGAGG 547
Query 420 aatgggaggaatgggaggaatgggaggaatgggtggaatgggaggaatgg 469
|||||| ||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 548 AATGGGTGGAATGGGAGGAATGGGTGGAATGGGAGGAATGGAAGGAATGG 597
Score = 327 bits (177), Expect = 7e-89
Identities = 316/379 (83%), Gaps = 25/379 (7%)
Strand=Plus/Plus
Query 415 ggc-ggaatgggaggaatgggaggaatgggaggaatgggtggaatgggaggaatgggagg 473
||| ||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 497 GGCAGGAATGGAAGGAATGGGAGGAATGGGAGGCATGGGCGGCATGGGAGGAATGGGTGG 556
Query 474 aatggaaggaatggaT-TTCTCGGTTTCTTTG-AGAAAT-GACTTCATACTTGTTCCTTG 530
||||| |||||||| | | || | | || ||| || || | || | ||
Sbjct 557 AATGGGAGGAATGGGTGGAATGGGAGGAATGGAAGGAATGGA-TT--T-CTCG-AAATTA 611
Query 531 ATTCGTGCAGAAACTAATGGGTGGAATGGGTGGAATGGGCGGACTCGAAGGGCTCggtgg 590
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ATGGGTG--G-----AATGGGTGGAATGGGTGGAATGGGCGGACTCGAAGGGCTCGGTGG 664
Query 591 aatgggtggtatgggaggaatgggaggcatgggtggtatgggaggaatgggaggcatgga 650
|||||| || ||||| |||||||||||||||||||| | ||||||||||||||
Sbjct 665 AATGGGAGGCATGGGTGGAATGGGAGGCATGGGTGG--T-------ATGGGAGGCATGGA 715
Query 651 aGAGTTTGAAGACAGTGATGATGAAGAAGAAACAGCAAAATCAGGAGACAAGAAGGATGA 710
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 AGAGTTTGAAGACAGTGATGATGAAGAAGAGACAGCAAAATCAGGAGACAAGAAGGATGA 775
Query 711 TGGTGTTAAGGAGGAAGCTCCCGCGGCAGAGAAGGCACCAGCAGCAGAAGAAACAACATC 770
|| ||||||||||||| || ||| |||||||||||||||| |||||||||||||||||
Sbjct 776 TGCCGTTAAGGAGGAAGGTCTTGCGACAGAGAAGGCACCAGCGGCAGAAGAAACAACATC 835
Query 771 TGTTATGGAAGGCAAGTGA 789
||||| ||||| |||||||
Sbjct 836 TGTTAAGGAAGACAAGTGA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5