BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895772
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02300.1 | Symbols: | Plant invertase/pectin methylesterase... 2296 0.0
> AT4G02300.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr4:1009366-1013034 REVERSE LENGTH=1599
Length=1599
Score = 2296 bits (1243), Expect = 0.0
Identities = 1481/1597 (93%), Gaps = 11/1597 (1%)
Strand=Plus/Plus
Query 4 AATAATCCAAATAGAGAAAGCCCAATTCACATAATTTTCAAATTACTGCCATTAATCTTT 63
||| |||||| |||||||| |||| ||||| |||||||| |||||| || ||||||||
Sbjct 10 AATCATCCAATTAGAGAAAAACCAAAACACATTATTTTCAACTTACTGTCACTAATCTTT 69
Query 64 TTCATAATCTTCTTATCCACCGTTGTTTCATCTCATTCACCATCCTACACCACTCACAAA 123
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 70 TTCCTAATCTTCTTATCCACCGTTGTTTCATCTCAATCACCATCATACACCACTCACAAA 129
Query 124 ACGCATCGTTTAACCGAAACCAAAACCATCCCTGAGCTCATAATCGCCGACTTAAACCTA 183
|| || |||||||||||||||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 130 ACCCAGCGTTTAACCGAAACCAAAACCATCCCCGAGCTTATCATCGCGGACTTAAACCTA 189
Query 184 ACCATCTTAAAGGTTAATCTCGCTTCTTCCAACTTCTCTGACCTCCAAACCCGTCTTGGT 243
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct 190 ACCATCTTAAAGGTTAATCTCGCTTCCTCCAACTTCTCCGACCTCCAAACCCGTCTTTTT 249
Query 244 CCAAACCTAACCCACTGTGAACGTTGCGCATTCGAAGACTGTCTCGGGCTACTCGATGAC 303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CCAAACCTAACCCACTATGAACGTTGCGCATTCGAAGACTGTCTCGGGCTACTCGATGAC 309
Query 304 ACCATCTCCGACCTCAAAACCGCAATCTCCAAACTCCGATCTTCCTCTTTTGAGTTCAAC 363
||||||||||||||| |||||||| ||||| | || |||||||||||| |||||||||||
Sbjct 310 ACCATCTCCGACCTCGAAACCGCAGTCTCCGATCTTCGATCTTCCTCTCTTGAGTTCAAC 369
Query 364 GACGTCAGTTTGTTGCTCAGCAACGCCATGACAGACCAAGACACGTGTCTTGATGGTTTC 423
||| |||| ||||||||| ||||| ||||||| ||||||| ||||||||||||||||||
Sbjct 370 GACATCAGCATGTTGCTCACCAACGTCATGACATACCAAGATACGTGTCTTGATGGTTTC 429
Query 424 TCGACAAGCGACAATGAGAATAATAATGATATGATGTATGAATTGCCTGAGAACTTGAAG 483
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 430 TCGACAAGTGACAATGAGAATAATAATGATATGACGTATGAATTGCCTGAGAACTTGAAG 489
Query 484 GAGAGCATCTTAGACATCTCTAACGACCTTAGCAACTCCCTCGATATGCTTCAGATGATC 543
|||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 490 GAGATCATCTTAGACATCTCTAACAACCTTAGCAACTCCCTCCATATGCTTCAGGTGATT 549
Query 544 T-CAGGGAAG-AA-CTCTACCCTAGAATCATCTGAAGTTGACGTTGAGTACCCGAGTTGG 600
| || ||||| || || | ||| | ||||||| |||||||||||||||||||||||||||
Sbjct 550 TCCA-GGAAGAAACCT-TCCCCGA-AATCATCAGAAGTTGACGTTGAGTACCCGAGTTGG 606
Query 601 GTCTCAAAGAATGACAAGAGACTCCTTGAGGCTCCAGTACAAGAGATCACCAATTTTAAT 660
||||| |||||||| ||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 607 CTCTCAGAGAATGACCAGAGACTCCTTGAGGCTCCGGTACAAGAG---ACCAATTACAAT 663
Query 661 CTCTCAGTGGCGATTGATGGTACCGGAAACTTCACAACCATTAATGCCGCCGTCTCTGCC 720
||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 664 CTCTCGGTGGCGATTGATGGTACCGGAAACTTCACAACCATTAATGATGCCGTCTTTGCT 723
Query 721 GCTCCCAACAAGAGTGATACTAGATTTATTATCTATATAAAAGGTGGGGAATATTTTGAG 780
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GCTCCCAACATGAGCGAAACTAGATTTATTATCTATATAAAAGGTGGGGAATATTTTGAG 783
Query 781 AACGTCGAATTACCGAAGAAGAAGACAATGATAATGTTTATCGGAGATGGTATCGGAAAA 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AACGTCGAATTACCTAAGAAGAAGACAATGATAATGTTTATCGGAGATGGTATCGGAAAA 843
Query 841 ACAGTCATAAAAGCAAACCGCAGCCGCATTGATGGATGGTCAACATTTCAAACTGCTACC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 844 ACAGTCATAAAAGCAAACCGCAGCCGCATTGATGGATGGTCAACATTTCAAACTCCTACC 903
Query 901 GTTGGCGTGAAAGGTAAAGGTTTCATAGCTAAGGACATATCCTTCGTGAATTTTGCTGGA 960
|| ||||||||||||||||| | |||||| ||||||||||| |||||||||| ||| |||
Sbjct 904 GTAGGCGTGAAAGGTAAAGGCTACATAGCAAAGGACATATCATTCGTGAATTCTGCAGGA 963
Query 961 CTGGCCAAAGAACAAGCCGTGGCATTGCGAAGCGGCTCTGATCACTCTGCCTTTTATCGT 1020
| |||||||| ||| || ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 964 CCGGCCAAAGCACAGGCTGTGGCCTTTCGAAGCGGCTCTGATCACTCTGCCTTTTACCGT 1023
Query 1021 TGTGAGTTCGATGGTTACCAAGACACCCTTTATGTTCATTCAGCCAAACAATTCTATCGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1024 TGTGAGTTCGATGGTTACCAAGACACCCTTTATGTTCATTCAGCCAAACAATTTTATCGA 1083
Query 1081 GAATGCGATATATATGGTACTATCGATTTCATATTCGGCAACGCGGCTGTTGTGTTCCAG 1140
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1084 GAATGCGATATATATGGTACAATCGATTTCATATTCGGCAATGCGGCTGTTGTGTTCCAG 1143
Query 1141 AATTGTAGTCTTTATGCTCGTAAACCAAATCCTGAACATAAAATTGCATTCACCGCTCAA 1200
||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1144 AATAGTAGTCTTTATGCTCGTAAACCTAATCCTGGACATAAAATTGCATTCACCGCTCAA 1203
Query 1201 AGCCGCAATCAGTCAGACCAGCCCACCGGTATATCTAT-CATTCATAGTAGAATCTTGGC 1259
|||||||||||||| ||||||||||| ||||||||||| | || || |||||||||||||
Sbjct 1204 AGCCGCAATCAGTCGGACCAGCCCACGGGTATATCTATAC-TTAATTGTAGAATCTTGGC 1262
Query 1260 CGCACCTGATTTGATCCCTGTGAAAGAAAATTTCACGGCGTACTTAGGTCGACCATGGAG 1319
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1263 CGCACCTGATTTGATCCCTGTGAAAGAAAACTTCAAGGCGTACTTAGGTCGACCATGGAG 1322
Query 1320 AAAATATTCTAGGACGGTTATCATAAAATCATTTATTGATGATCTCATACATCCTGCTGG 1379
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1323 AAAATATTCTAGGACGGTTATCATAAAATCATTTATTGATGATCTTATACATCCCGCTGG 1382
Query 1380 ATGGTTGGAGTGGAAAAAAGATTTTGCACTTGAAACCTTATATTATGGAGAGTATATGAA 1439
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1383 ATGGTTGGAGGGGAAAAAAGATTTTGCACTTGAAACTTTATATTATGGAGAGTATATGAA 1442
Query 1440 TGAAGGGCCTGGGGCAAACATGACAAATCGGGTCACATGGCCCGGTTTTCGACGCATCGA 1499
|||||||||||||||||||||| |||| || ||||||||||| |||||| ||||||||||
Sbjct 1443 TGAAGGGCCTGGGGCAAACATGGCAAAGCGAGTCACATGGCCTGGTTTTAGACGCATCGA 1502
Query 1500 AAACGAAACGGAGGCAACCCAATTCACCGTCGGTCCATTTATCGATGGTAGCACATGGCT 1559
|||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1503 AAACCAAACGGAGGCTACCCAATTCACAGTCGGTCCATTTATCGACGGTAGCACATGGCT 1562
Query 1560 TAATTCAACCGGCATCCCTTTTAGTCTCGGTTTCTAA 1596
|||||||| ||||||||||||||||| |||||||||
Sbjct 1563 AAATTCAACTGGCATCCCTTTTAGTCTTGGTTTCTAA 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5