BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895777
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557... 171 4e-42
AT5G65780.2 | Symbols: ATBCAT-5 | branched-chain amino acid ami... 147 8e-35
AT5G65770.2 | Symbols: LINC4 | little nuclei4 | chr5:26311587-2... 147 8e-35
> AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557437-2561802
REVERSE LENGTH=2924
Length=2924
Score = 171 bits (92), Expect = 4e-42
Identities = 120/132 (91%), Gaps = 8/132 (6%)
Strand=Plus/Plus
Query 1 ATGGTGCTATTGGTTCTGGAGTTGATGAATTGGCGGAGGAA------G--CATAAGAAAC 52
||||||||||||||||||| ||||||||||||||||||||| | || |||||||
Sbjct 510 ATGGTGCTATTGGTTCTGGTGTTGATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAAC 569
Query 53 GTGTTGCTCTTCAGAGACAAGCTGCTGTTACGGTCGAAGCTGCTGAGGATTATGCTCGTA 112
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 570 GTGTTGCTCTTCAGAGACAAGCTGCTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGA 629
Query 113 GGTTTGAATCTG 124
||||||||||||
Sbjct 630 GGTTTGAATCTG 641
> AT5G65780.2 | Symbols: ATBCAT-5 | branched-chain amino acid aminotransferase
5 / branched-chain amino acid transaminase 5
(BCAT5) | chr5:26311311-26316025 FORWARD LENGTH=3579
Length=3579
Score = 147 bits (79), Expect = 8e-35
Identities = 90/95 (95%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 118 GAATCTGAGGTTTATGATTACCAACACAACATGGGTCTTCTCCTTTTGGAGAAAAACGAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GAATCTGAGGTTTATGATTACCAACACAACATGGGTCTTCTCCTTTTGGAGAAAAACGAA 543
Query 178 TTGATGT-CTAAGTATGAAGAGATTAAGGCCTCTG 211
||| | | | ||||||||||||||||||||||||
Sbjct 544 TTG-TCTTCGCAGTATGAAGAGATTAAGGCCTCTG 577
Score = 145 bits (78), Expect = 3e-34
Identities = 82/84 (98%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 211 GCTGTCTCTGAAAGGGAATCTTCGCTACTTAAGAAGGAGCAAGAGCTGCTTGTTGCTGAA 270
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1252 GCTGTCTCTGAAAGGGAATCTTCGCTACTTAAGAAGGAGCAAGAACTGCTTGTTGCTGAA 1311
Query 271 GAAAATATTGCCAGCAAGGAATCT 294
||||| ||||||||||||||||||
Sbjct 1312 GAAAAAATTGCCAGCAAGGAATCT 1335
> AT5G65770.2 | Symbols: LINC4 | little nuclei4 | chr5:26311587-26315544
FORWARD LENGTH=3129
Length=3129
Score = 147 bits (79), Expect = 8e-35
Identities = 90/95 (95%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 118 GAATCTGAGGTTTATGATTACCAACACAACATGGGTCTTCTCCTTTTGGAGAAAAACGAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GAATCTGAGGTTTATGATTACCAACACAACATGGGTCTTCTCCTTTTGGAGAAAAACGAA 267
Query 178 TTGATGT-CTAAGTATGAAGAGATTAAGGCCTCTG 211
||| | | | ||||||||||||||||||||||||
Sbjct 268 TTG-TCTTCGCAGTATGAAGAGATTAAGGCCTCTG 301
Score = 145 bits (78), Expect = 3e-34
Identities = 82/84 (98%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 211 GCTGTCTCTGAAAGGGAATCTTCGCTACTTAAGAAGGAGCAAGAGCTGCTTGTTGCTGAA 270
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1033 GCTGTCTCTGAAAGGGAATCTTCGCTACTTAAGAAGGAGCAAGAACTGCTTGTTGCTGAA 1092
Query 271 GAAAATATTGCCAGCAAGGAATCT 294
||||| ||||||||||||||||||
Sbjct 1093 GAAAAAATTGCCAGCAAGGAATCT 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13572292230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5