BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895780
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02220.1 | Symbols: | zinc finger (MYND type) family protei... 1947 0.0
> AT4G02220.1 | Symbols: | zinc finger (MYND type) family protein
/ programmed cell death 2 C-terminal domain-containing protein
| chr4:976278-979163 FORWARD LENGTH=1713
Length=1713
Score = 1947 bits (1054), Expect = 0.0
Identities = 1192/1260 (95%), Gaps = 3/1260 (0%)
Strand=Plus/Plus
Query 1 ATGAGGAGCTTCAACAGAGACTCCATGGATGATTTCAAAGGCCTCCGAATAACTCAGCTT 60
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ATGAGTAGCTTCAACGGAGACTCCATGGATGATTTCAAAGGCCTCCGAATAACTCAGCTT 255
Query 61 GATGATGATGACGATGACGAAACTGCGGTGGAACAGACAAACatggatgaatttgatgat 120
||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||
Sbjct 256 GATGATGATGACGATGATGAAACTGCGGTGGAACCTATAAATATGGATGAATTTGATGAT 315
Query 121 gatgatgatgaggaagatgaggaagattatgaacctgtgatgTTAGGTTTCGTAGAGAGT 180
|||||||| | | ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 316 GATGATGA-G-G-AAGATGATGAAGATTATGAACCTGTGATGTTAGGTTTCGTTGAGAGT 372
Query 181 CCTAAGTTCTCATGGTCAAATCTTCGTCAACTGTTCCCTAATCTAGCTGGTGGTGTTCCG 240
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 373 CCTAAATTCGCATGGTCAAATCTTCGTCAACTGTTCCCTAATTTAGCTGGTGGTGTTCCG 432
Query 241 GCATGGTTGGATCCAGTTAATTTACCTTCAGGGAAGTCAATTTTATGTGATTTATGTGAA 300
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 433 GCATGGTTGGATCCAGTTAATTTACCATCAGGGAAGTCAATTCTATGTGATCTATGTGAA 492
Query 301 GAACCTATGCAATTTGTACTTCAACTTTATGCTCCTTTAACGGATAAGGAATCAGCTTTT 360
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 493 GAACCTATGCAATTTGTACTTCAACTTTATGCTCCTTTAACAGACAAGGAATCAGCTTTT 552
Query 361 CATCGGACACTGTTTCTCTTCATGTGTCCATCTATGTCATGTCTCCTTCGTGATCAACAT 420
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 553 CATCGGACATTGTTTCTCTTCATGTGTCCATCTATGTCTTGTCTCCTTCGTGATCAACAT 612
Query 421 GAACAATGGAAACGTGCCCCCGAGAAGGCTATGCGGAGTACGAAGGTTTTCCGTTGCCAA 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 613 GAACAATGGAAACGTGCCCCAGAGAAGGCTATGCGGAGTACGAAGGTTTTCCGTTGCCAA 672
Query 481 TTGCCTCGGGTTAATCCTTTTTACTCGAGTGAGGCCCCAAAGCACAATGGAACAGACAAG 540
|||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 673 TTGCCTCGAGCTAATCCTTTTTACTCGAGTGAGGCTCCAAAGCACGATGGAACAGACAAG 732
Query 541 CCATTGGGAGATGGAGCTCCGCTTTGCACTTGGTGTGGAACGTGGAAAGGAGATAAACTA 600
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 733 CCATTGGGTCATGGAGCTCCGCTTTGCACTTGGTGTGGAACATGGAAAGGAGATAAACTA 792
Query 601 TGTAGTGGCTGCAAAAGTGCTCGATACTGTTCACAAAAACACCAGGCCCTGCATTGGCGT 660
||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 793 TGTAGCGGCTGCAAAAATGCTCGATACTGTTCACCGAAACACCAGGCCCTGCATTGGCGC 852
Query 661 TTAGGTCATAAAACCGAATGCCAACAGCTTCGAACGGTTATTGAAACATCTGAATCAGGC 720
|| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 853 TTGGGTCATAAAACCGAATGCCAACAGCTTCGAACGGTTAGCGAAACATCTGACTCAGGC 912
Query 721 CGAGTCAATAATGGGATTGCTCTAACTCAAAAGCAGAAAGTTGCGAGTAAGAGTCTATGG 780
| |||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 913 CCTGTCAATAATGGGGTTGCTCCAACTGAAAAGCAGAAAGTTGCGAGTAAGAGTTTATGG 972
Query 781 AAAGAATTTGTAATGATCAACGAGGATGAAAGTGAGTATGATACAGAGATGTCAGGAGAT 840
|||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 973 AAAGAATTTGTATTGATCAATGAGGATGAAAGTGAGTATGATACTGAGATGTCAGGAGAT 1032
Query 841 GATGAAATAGCTAAACCTTTGGTCTCAAAGAGAGAAGTTGATGACCAAATGAAATCGCTA 900
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1033 GATGAAGTAGCTAAACCTTTGGTCTCAAAGAGAGAAGTTGACGACCAAATGAAATCGCTA 1092
Query 901 ATGAACGATTTTGAGGGAGATGCTGATAAAAAGACTTGGGTTAATTTCCAGCAACGTGTA 960
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1093 ATGAACGATTTTGAGGGAGATGCTGATAAAAAGAATTGGGTTAATTTCCAGCAACGCGTA 1152
Query 961 GCCAAAGCACCTGAACAAGTTCTAAGGTATTCCCGGAGCTCTGGTGCTAAACCCCTCTGG 1020
| |||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1153 GACAAAGCCCCTGAACAAGTTCTGAGATATTCCCGGAGCTCTGGTGCTAAACCCCTTTGG 1212
Query 1021 CCAATATCAAGCGGACGAGTCTCTAAATCTGAGCTTCCCAATTGCAAATCTTGTGGTGGT 1080
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1213 CCAATAGCAAGCGGACGAGTCTCTAAATCTGAGCTTCCCAGTTGCAAATCTTGTGGTGGT 1272
Query 1081 CCTCGTTGTTTTGAATTTCAGGTTATGCCGCAGCTACTGTTCTTCTTCGGCGGGAAAAAC 1140
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1273 CCTCGTTGTTTTGAATTTCAGGTGATGCCGCAGCTACTGTTCTTCTTCGGTGGGAAGAAC 1332
Query 1141 GATAGGGACTCTCTCGATTGGGCAACAATCGTGGTGTACACGTGTGAGAACTCGTGTGAC 1200
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1333 GAGAGGGAATCTCTCGATTGGGCAACAATCGTGGTGTACACTTGTGAGAACTCGTGTGAC 1392
Query 1201 TCGAACTTAAGCTACAAGGAAGAATTTGTCTGGGTTCAACTATACAGTCAGACAACTTAG 1260
|||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1393 TCGAGCTTAAGTTACAAGGAAGAGTTTGTCTGGGTTCAACTATACAGTCAGACAACTTAG 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5