BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895784

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02180.1 | Symbols:  | DC1 domain-containing protein | chr4:...   235    2e-61
  AT4G02190.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   233    8e-61


> AT4G02180.1 | Symbols:  | DC1 domain-containing protein | chr4:959964-963517 
FORWARD LENGTH=2970
Length=2970

 Score =  235 bits (127),  Expect = 2e-61
 Identities = 145/154 (94%), Gaps = 0/154 (0%)
 Strand=Plus/Plus

Query  1    ATGGATTGTGAGGGAGTGTTAATGCCGTTGGTCCACGAACATCTTATGATGCCTTGGAAT  60
            ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  103  ATGGATTCTGAGGGAGTGTTAATGCCGTTGGTCCATGAACATCTTATGATGCCTTGGAAT  162

Query  61   GATCTAAGGAAAGGTGATTGCTGTGGACTCTTGGAAGCTATTAGTGTTGGCTATTATTGC  120
            |||||||||||||||||||| |||||||||| | ||||| | |||||||| |||||||||
Sbjct  163  GATCTAAGGAAAGGTGATTGTTGTGGACTCTCGAAAGCTGTCAGTGTTGGTTATTATTGC  222

Query  121  AAAAGCTGCGATTTTTTCGTCCACAAGAAATGTG  154
            ||||||||||||||||||| ||||||||||||||
Sbjct  223  AAAAGCTGCGATTTTTTCGCCCACAAGAAATGTG  256


> AT4G02190.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr4:967372-969351 FORWARD LENGTH=1980
Length=1980

 Score =  233 bits (126),  Expect = 8e-61
 Identities = 194/225 (86%), Gaps = 12/225 (5%)
 Strand=Plus/Plus

Query  184  ATGGATTCTGAGGGAGTGTTAAGGCCGTTGATCCACGATCA-TCTTATGATGCCTTGGAA  242
            |||||||||||||||||||||  || |||||||||||| || || |||||| |||| |  
Sbjct  1    ATGGATTCTGAGGGAGTGTTATTGCGGTTGATCCACGAGCATTC-TATGATCCCTT-G--  56

Query  243  TAATGATCTGCGGAAAGGTGATTGTTGTGGACGCTTTGAAGCTACCAGCGATGGCTACTA  302
            |||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  57   TAATCATCTGAGGAAAGGTGATTGTTGTGGACGCTTTGAAGCTATAAGCGATGGCTACTA  116

Query  303  TTGCAAAGGC-TGCCATTTTTTCGTCCACAAGACATGTGGCGAGTCA--CC-CA-AATAT  357
             ||||||  | ||| |||||||||||||||||| ||||| ||| | |  || |  ||| |
Sbjct  117  CTGCAAAA-CATGCGATTTTTTCGTCCACAAGAAATGTGTCGA-TGAGGCCTCTGAATCT  174

Query  358  ATCGAGCATCCATCTCACCCCGCTCACACTCTTCAGCTTCTAAGT  402
            ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  175  ATCGAGCATCCATCTCATCCCGGTCACACTCTTCAGCTTCTAAGT  219


 Score =  169 bits (91),  Expect = 2e-41
 Identities = 135/156 (87%), Gaps = 4/156 (3%)
 Strand=Plus/Plus

Query  1    ATGGATTGTGAGGGAGTGTTAATGCCGTTGGTCCACGAACA-TCTTATGATGCCTTGGAA  59
            ||||||| ||||||||||||| ||| |||| ||||||| || || |||||| ||||| ||
Sbjct  1    ATGGATTCTGAGGGAGTGTTATTGCGGTTGATCCACGAGCATTC-TATGATCCCTTGTAA  59

Query  60   TGATCTAAGGAAAGGTGATTGCTGTGGACTCTTGGAAGCTATTAGTGTTGGCTATTATTG  119
            | |||| |||||||||||||| ||||||| ||| |||||||| || | |||||| || ||
Sbjct  60   TCATCTGAGGAAAGGTGATTGTTGTGGACGCTTTGAAGCTATAAGCGATGGCTACTACTG  119

Query  120  CAAAAGC-TGCGATTTTTTCGTCCACAAGAAATGTG  154
            ||||| | ||||||||||||||||||||||||||||
Sbjct  120  CAAAA-CATGCGATTTTTTCGTCCACAAGAAATGTG  154



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5