BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895812
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01985.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 329 2e-89
> AT4G01985.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:866236-868126
REVERSE LENGTH=1891
Length=1891
Score = 329 bits (178), Expect = 2e-89
Identities = 339/414 (82%), Gaps = 22/414 (5%)
Strand=Plus/Plus
Query 1 ATGGGGAAGTTCGAGAGAAAGGGTTGGGTAGTGGCGTGTGTGATGTTGTTATTGATGTCG 60
||||| || |||| ||||| |||||||||||||||||||||| || |||| ||| |||||
Sbjct 1 ATGGGAAAATTCGTGAGAAGGGGTTGGGTAGTGGCGTGTGTGGTGGTGTTGTTGTTGTCG 60
Query 61 TCGCAAGTATTGGGAAAATTATCTGGTACAGGTAGTCATGGTAGTGGCAAAAACCGACGT 120
||||||| ||||||||||| || ||||| | |||||| || || || || |||||||
Sbjct 61 ACGCAAGTCTTGGGAAAATTGTCAGGTAC---TGGTCATGATATTGCCAGAAGCCGACGT 117
Query 121 CATAAACATGGAGGAGGAAGTGTTGGTGTTGGTGCAGGTGCCGGAGGTGGTGCTAGCggt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CATAAACATGGAAGAGGAAGTGTTGGTGTTGGTGCAGGTGCCGGAGGTGGTGCTAGCGGT 177
Query 181 ggtattggtgtcggaggtggagtaggtggaggaggaagtataggtggtggtggtggtgtt 240
|| ||||| ||||||||||||| ||||||||||||| ||||||| ||| |||||||||||
Sbjct 178 GGCATTGGAGTCGGAGGTGGAGGAGGTGGAGGAGGAGGTATAGGCGGTAGTGGTGGTGTT 237
Query 241 ggagccgggggaggagcaggtggtggtgttggagccgggggaggagcaggtggtggtgtt 300
||||| |||||||||| |||||||| | ||| || || | || ||| |||| |
Sbjct 238 GGAGCTGGGGGAGGAGT---TGGTGGTG--G-AGCAGGCGGTGC--CAT-TGGAGGTGGT 288
Query 301 ggagccgggggaggagctggtggagGTGGCAATGTTGGTGGCCGTGGAAAAGGCCATGGC 360
| | | || |||||||||||||||||| || | |||||||| ||| || ||||
Sbjct 289 GCATCAGG---AGGAGCTGGTGGAGGTGGAAAAGGCCGTGGCCGT--AAA-GGTGGTGGC 342
Query 361 GGTAAA-GGTGGTGGTAAAAG-TGGTGGTGTAGGAGCcggaggaggagttggtg 412
|| | || || || | | |||||||||||||||||||||||||| |||||
Sbjct 343 GG-AGCTGGAGGAGG-AGTTGGTGGTGGTGTAGGAGCCGGAGGAGGAGCTGGTG 394
Score = 135 bits (73), Expect = 5e-31
Identities = 398/546 (73%), Gaps = 58/546 (11%)
Strand=Plus/Plus
Query 196 ggtggag-taggtggaggaggaagt-ataggtggtggtggtggtgttggagccg-gggga 252
||||||| || |||| |||| ||| | || | | |||| || ||||||| || |||
Sbjct 1192 GGTGGAGCTA-GTGGTGGAGCTAGTGGT-GGAGCTAGTGGCGGAGTTGGAGGCGCTGGG- 1248
Query 253 ggagcaggtggtggtgttggagccggg-ggaggagcaggtggtggtgttggagccgg-g- 309
||||| |||||| ||||||||| |||| || || | ||||||||||| |||| || |
Sbjct 1249 GGAGCTGGTGGTAGTGTTGGAG-CGGGAGGCGGTGTTGGTGGTGGTGTAGGAGGTGGAGT 1307
Query 310 -ggaggagctggtggagGTGGCAATGTTGG-TG-GCCG-TGGAAAAGGC-CATGGCGGTA 364
|| |||| | || | ||||| |||||| | |||| ||| ||| | || || |
Sbjct 1308 CGGCGGAGGT-GT-G-GGTGGTGCTGTTGGAGGAGCCGTTGG---TGGCGC-TGTTGG-A 1359
Query 365 -AAGGTGGTGGTAAAAGTGGTGGTGTAGGAGCcggaggagg-agt--tggtgttggtggc 420
|||||| || |||| ||||| ||| | ||| | || ||| ||| | |||||||
Sbjct 1360 GGAGGTGGAGGCGGCAGTGTTGGTGGAGG-G--GGACGTGGTAGTGGTGGAGCTGGTGGC 1416
Query 421 ggaattggagg-ag-g-tgtag-gtggcgga-gtcggaggaggtgctggcggtagtggga 475
|||| ||| || || | || || | || ||| || | ||||| || ||| || || |||
Sbjct 1417 GGAACTGGTGGTAGTGTTGGAGCG-GGAGGAGGT-GTAGGAGTTGGTGGAGG-AG-GGG- 1471
Query 476 gtggaggtgggggtgctggaggaggtgccggaggtggagt---tggtggtggaggtggtg 532
|| ||| || |||||||| || |||| ||||||||||| || |||| |||||||
Sbjct 1472 GTATAGGAGGCGGTGCTGGGGGTGGTGTAGGAGGTGGAGTCGGCGGAGGTGTTGGTGGTG 1531
Query 533 gtgttggtggtgttattggaggtggtgtcggaggaggtgttggtggcgctgttggaggtg 592
||||| | || | |||| |||| || || |||||||||||||| || | ||| |||
Sbjct 1532 GTGTTAGAGGAGCCGTTGGTGGTGCAGTTGGCGGAGGTGTTGGTGGAGC-G--GGACGTG 1588
Query 593 gtggagttggtttaggtggtgggggcggtcttgttggtggtggaggaggaggacttggcg 652
|| || ||| | || | | | ||||| | || | ||||||||| | | ||| |
Sbjct 1589 GT--AG-TGG--T-GGAGCTAGTGGCGG---AGCAGGAGCCGGAGGAGGA-G-C-TGGTG 1636
Query 653 gtggtgttggaggtggagCAAATGTTGGTGTAGGAGTTGGAGCCGGGGGTGGTGCAGGCG 712
| ||||||||||| |||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1637 GGGGTGTTGGAGGCGGAGCAAATGTTGGTGTAGGAGTTGGAGCCGGGGGTAGTACAGGAG 1696
Query 713 GAGGAG 718
||||||
Sbjct 1697 GAGGAG 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5