BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895816

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51590.1 | Symbols: MNS1, MANIB | alpha-mannosidase 1 | chr1...   250    5e-66


> AT1G51590.1 | Symbols: MNS1, MANIB | alpha-mannosidase 1 | chr1:19128144-19132318 
REVERSE LENGTH=2040
Length=2040

 Score =  250 bits (135),  Expect = 5e-66
 Identities = 152/160 (95%), Gaps = 2/160 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGAGAAGTAGATCGATTAGTGGTTATGGGATATGGAAATATTTGAATCATGCGTAT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  187  ATGGCGAGAAGTAGATCGATTAGTGGTTATGGGATATGGAAATATTTGAATCCTGCGTAT  246

Query  61   TATCTTGGAAGACCGAGACGCTTGGCTTTGCTTTTCATTGTCTTCGTCTCTGTTTCTATG  120
            |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  247  TATCTTAGAAGACCGAGACGTTTGGCTTTGCTTTTCATTGTCTTCGTCTCTGTTTCTATG  306

Query  121  CTTGT-TCGGGATCGTATAAATCTTTTCCGAGAACATGAG  159
            ||||| | |||||||||| ||||||  |||||||||||||
Sbjct  307  CTTGTCT-GGGATCGTATTAATCTTGCCCGAGAACATGAG  345


 Score =  193 bits (104),  Expect = 9e-49
 Identities = 112/116 (97%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  158  AGCCTCAGACAAAAGATGGCACTGATAGCTTTGGTGGCCTTGGAGCAACTATGGTAGATT  217
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  554  AGCCTCGGACAAAAGATGGCACTGATAGCTTTGGTGGCCTTGGAGCAACTATGGTAGATT  613

Query  218  CTTTAGATACACTCTATATAATGGGTCTGGATGAGCAGTTTCAGAAAGCGAGAGAG  273
            |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct  614  CTTTAGATACACTCTATATAATGGGTCTAGATGAGCAGTTTCAAAAAGCCAGAGAG  669



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5