BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895824

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01897.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   604    1e-172


> AT4G01897.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); 
Has 763 Blast hits to 763 proteins in 180 species: Archae 
- 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; 
Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). 
| chr4:820336-821505 REVERSE LENGTH=559
Length=559

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 355/369 (96%), Gaps = 0/369 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGAGGAAGAGTTCATATACAGAATCAGTACGGAACAAGAATGGGAAGAGTTTCAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  40   ATGGCTGAGGAAGAGTTCATATACAGAATCAGTACGGAACAAGAATGGGAAGAGTTTAAG  99

Query  61   AAGAATGGATCTTCTTTTGGTGCAGAGATTGATAAATCAACTTGTTATTATCATCTCAGC  120
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  100  AAGAATGGATCTTCTTATGGTGCAGAGATTGATAAATCAACTTGTTATTATCATCTCAGC  159

Query  121  AAACTCGATCAGGTACAATTGACACTGAAGAACTTTTTCTTGAATGTTAAGGAGGATCTT  180
            ||||| |||||||||||||||||| |||||||||||||| || |||| |||||| |||||
Sbjct  160  AAACTTGATCAGGTACAATTGACATTGAAGAACTTTTTCGTGGATGTGAAGGAGTATCTT  219

Query  181  TACCTTCTTCAAGTCGATCCTAAGAAGCTTGGAGATGGATTGATCTATGAAGCTGTGGAT  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  220  TACCTTCTTCAAGTCGATCCTAAGAAGCTTGGAGATGGATTAATCTATGAAGCTGTGGAT  279

Query  241  GAAGTGAATAGCTTCCCTCACTTCTATGGTCCAGACAAAACCTTTGTTCCTCTTCCTCTA  300
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  280  GAAGTAAATAGCTTCCCTCACTTCTATGGTCCAGACAAAACCTTCGTTCCTCTTCCTCTA  339

Query  301  GATTCTGTCGTCAAAGCTGAGAAGTTAACATTCATCAATGGCAATTTCACCTGCAGCTTC  360
            |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct  340  GATTCTGTCGTCAAAGCTGAGAAGCTAACATTCATCAATGGAAATTTCACATGCAGCTTC  399

Query  361  TTGACTTGA  369
            |||||||||
Sbjct  400  TTGACTTGA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5