BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895836

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01790.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd...   689    0.0  


> AT4G01790.1 | Symbols:  | Ribosomal protein L7Ae/L30e/S12e/Gadd45 
family protein | chr4:769865-770835 FORWARD LENGTH=614
Length=614

 Score =  689 bits (373),  Expect = 0.0
 Identities = 472/517 (91%), Gaps = 17/517 (3%)
 Strand=Plus/Plus

Query  1    ATGAGAGGCGTCACACCCATAAACCCTCAGAAGAAGATGGAAGCTGATTCGAATCCCGTC  60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  4    ATGAGAGGCGTCACACCCATAAACCCTCAGAAGAAGATAGAAGCTGATTCGAATCCCGTC  63

Query  61   AAAGAATCAGATTACTATGAAGGCGAACGTCTTACTCATCTACTCGACTTGATTCAGAGA  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   AAAGAATCTGATTACTATGAAGGCGAACGTCTTACTCATCTACTCGACTTGATTCAGAGA  123

Query  121  GGAATTGAGACGTCCAAGCTTTCGAATGTGAACTCATTGCCTGAGAAGATATGGCTCAAG  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  124  GGAATTGAGACGTCCAAGCTTTCGAATGTGAACTCATTACCTGAGAAGATATGGCTCAAG  183

Query  181  AAACAAATCGCGATTGGGATCAACGAAGTCACTCGTGTTCTTGAGAGGATGAAATCC-AA  239
            || ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct  184  AAGCAAATAGCGATTGGGATCAACGAAGTCACTCGAGTTCTTGAGAGGATGAA-TCCCAA  242

Query  240  CACTACT-G--ACCAACAACAAAACCCTAGACCACCTCCGGTTCAACTTCAGGTAGTGAT  296
            || |||| |  |||||||||||||||||| |  ||         ||||||||||||||||
Sbjct  243  CAATACTAGTGACCAACAACAAAACCCTA-A--AC---------AACTTCAGGTAGTGAT  290

Query  297  TGTAGTAGCAGATTGTAAACCGAGGACGCTAACGAAGCATATACCCAACTTAGCGGCTTC  356
            | |||||||||||||||||||||||| ||| || |||||||||||||||||||| |||||
Sbjct  291  TTTAGTAGCAGATTGTAAACCGAGGATGCTGACCAAGCATATACCCAACTTAGCTGCTTC  350

Query  357  CAGGAATGTTCCGGTTCTCTATATACGAGACAACAAACGAGCCTCTCTCAGATTAGGAGA  416
             || || ||||||||||||||| || | ||||||||||||||||||||||||||||| ||
Sbjct  351  GAGAAACGTTCCGGTTCTCTATGTAAGGGACAACAAACGAGCCTCTCTCAGATTAGGTGA  410

Query  417  GCTGGTTAAGCTCAAGACGGCACTAGCCATTGGTGTCAAGGCTAGAGGAAACGATCTCAA  476
            | ||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||
Sbjct  411  GTTGGTTAAGCTCAAGACGGCTCTAGCCATCGGTATCAAGGCTAGAGGAAATGATCTCAA  470

Query  477  TCTACTACTTCAACAGATTCTTACTAGAGATTCTTGA  513
             ||||||||| ||||||||||| | ||||||||||||
Sbjct  471  CCTACTACTTAAACAGATTCTTCCGAGAGATTCTTGA  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5