BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895836 Length=513 Score E Sequences producing significant alignments: (Bits) Value AT4G01790.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 689 0.0 > AT4G01790.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr4:769865-770835 FORWARD LENGTH=614 Length=614 Score = 689 bits (373), Expect = 0.0 Identities = 472/517 (91%), Gaps = 17/517 (3%) Strand=Plus/Plus Query 1 ATGAGAGGCGTCACACCCATAAACCCTCAGAAGAAGATGGAAGCTGATTCGAATCCCGTC 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4 ATGAGAGGCGTCACACCCATAAACCCTCAGAAGAAGATAGAAGCTGATTCGAATCCCGTC 63 Query 61 AAAGAATCAGATTACTATGAAGGCGAACGTCTTACTCATCTACTCGACTTGATTCAGAGA 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 AAAGAATCTGATTACTATGAAGGCGAACGTCTTACTCATCTACTCGACTTGATTCAGAGA 123 Query 121 GGAATTGAGACGTCCAAGCTTTCGAATGTGAACTCATTGCCTGAGAAGATATGGCTCAAG 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 124 GGAATTGAGACGTCCAAGCTTTCGAATGTGAACTCATTACCTGAGAAGATATGGCTCAAG 183 Query 181 AAACAAATCGCGATTGGGATCAACGAAGTCACTCGTGTTCTTGAGAGGATGAAATCC-AA 239 || ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| || Sbjct 184 AAGCAAATAGCGATTGGGATCAACGAAGTCACTCGAGTTCTTGAGAGGATGAA-TCCCAA 242 Query 240 CACTACT-G--ACCAACAACAAAACCCTAGACCACCTCCGGTTCAACTTCAGGTAGTGAT 296 || |||| | |||||||||||||||||| | || |||||||||||||||| Sbjct 243 CAATACTAGTGACCAACAACAAAACCCTA-A--AC---------AACTTCAGGTAGTGAT 290 Query 297 TGTAGTAGCAGATTGTAAACCGAGGACGCTAACGAAGCATATACCCAACTTAGCGGCTTC 356 | |||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||| Sbjct 291 TTTAGTAGCAGATTGTAAACCGAGGATGCTGACCAAGCATATACCCAACTTAGCTGCTTC 350 Query 357 CAGGAATGTTCCGGTTCTCTATATACGAGACAACAAACGAGCCTCTCTCAGATTAGGAGA 416 || || ||||||||||||||| || | ||||||||||||||||||||||||||||| || Sbjct 351 GAGAAACGTTCCGGTTCTCTATGTAAGGGACAACAAACGAGCCTCTCTCAGATTAGGTGA 410 Query 417 GCTGGTTAAGCTCAAGACGGCACTAGCCATTGGTGTCAAGGCTAGAGGAAACGATCTCAA 476 | ||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||| Sbjct 411 GTTGGTTAAGCTCAAGACGGCTCTAGCCATCGGTATCAAGGCTAGAGGAAATGATCTCAA 470 Query 477 TCTACTACTTCAACAGATTCTTACTAGAGATTCTTGA 513 ||||||||| ||||||||||| | |||||||||||| Sbjct 471 CCTACTACTTAAACAGATTCTTCCGAGAGATTCTTGA 507 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24514263736 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5