BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895839

Length=1668
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25490.1 | Symbols:  | Protein kinase family protein | chr3:...   111    2e-23


> AT3G25490.1 | Symbols:  | Protein kinase family protein | chr3:9241725-9243485 
FORWARD LENGTH=1674
Length=1674

 Score =  111 bits (60),  Expect = 2e-23
 Identities = 260/350 (74%), Gaps = 39/350 (11%)
 Strand=Plus/Plus

Query  1222  CAAGTAGCGGAGTTCATCAACGAAGTGATCATCCTTTCACGAA-TCACTGATACAAAAGT  1280
             ||||||| | ||||||||||||||||| || | ||||||| || | ||  | |  || ||
Sbjct  433   CAAGTAGAGCAGTTCATCAACGAAGTGCTCGTGCTTTCACAAATTAAC-CACAGGAACGT  491

Query  1281  AGTGAAGCTCATT-GGTTGCTGTCTAGAGACTGAAGTTCCCTT-TCTGGTCTATGAGTTT  1338
              || |||||| || ||||||||||||||||||||||||||||| | |||||||||| || 
Sbjct  492   TGTCAAGCTC-TTGGGTTGCTGTCTAGAGACTGAAGTTCCCTTGT-TGGTCTATGAATTC  549

Query  1339  GTGT-CCGGTGGCACCCTCT-CAGA-CAACTTGCATGGTTCTAAATCTGGtttttt-tCT  1394
              | | |||||||| |||| | | || || |||||| ||||| |  | || ||| || |||
Sbjct  550   AT-TACCGGTGGCTCCCTTTTC-GATCA-CTTGCACGGTTCCATGTTTG-TTTCTTCTCT  605

Query  1395  T-CAATGG-AAGGATCGGTTG-AGGATAGCAACT-GA-GATCGCTACAACTTTAGCATCA  1449
             | || ||| ||  | ||  || || ||||||| | || | | |||  | || |||| | |
Sbjct  606   TACA-TGGGAAC-ACCGCCTGGAG-ATAGCAA-TAGAAGTT-GCTGGAGCTATAGCGT-A  659

Query  1450  -CTTCACTCAG---CT-CAAGTCCCAATAATTCACCGTGATGTCAAGCCC-ACTAATAT-  1502
              |||||||| |   || | | ||| ||| || || || ||| ||||  |  |  ||||| 
Sbjct  660   TCTTCACTCCGGTGCTTCTATTCC-AATCATCCATCGCGATATCAAAACTGAA-AATATT  717

Query  1503  CTTATTGGATGAAGAACTCT--CTGTAAAAGTAGCTGATTTTGGGGCTTC  1550
             ||  ||||||||| |||| |  ||| |||||||||||| ||||| |||||
Sbjct  718   CTC-TTGGATGAA-AACT-TAACTGCAAAAGTAGCTGACTTTGGCGCTTC  764



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 82429294890


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5