BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895882
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00780.1 | Symbols: | TRAF-like family protein | chr4:33473... 1011 0.0
AT4G01390.1 | Symbols: | TRAF-like family protein | chr4:57024... 804 0.0
> AT4G00780.1 | Symbols: | TRAF-like family protein | chr4:334732-336344
FORWARD LENGTH=1171
Length=1171
Score = 1011 bits (547), Expect = 0.0
Identities = 778/883 (88%), Gaps = 41/883 (5%)
Strand=Plus/Plus
Query 1 ATGGTGAGACTGTT-TAAATCGCGTCACACAACATCTCACTCGTTCAAGATAGACAACTT 59
|||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 75 ATGGTGAGGCTGTTCAAAAT-ACGTCACACAACATCTCACTTGTTCAAGATAGACAACTT 133
Query 60 CTCTCTACTCAAAAAGTATGGAATCGAAAAGGTCGAATCCTCTGTTTTCGATCTCGCTGG 119
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CTCTTTACTCAAAAAGCATGGAATCGAAAAGGTCGAATCCTCTGTTTTCGATCTCGCTGG 193
Query 120 TCATAAATGGACACTCTCTGTCTACCCAAATGGGCATAA-AAGTGCTAAGGGGACTCATG 178
||| ||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 194 TCACAAATGGAAACTCTCTGTGTACCCAAATGGGCATAAGAA-TGCTAAGGGGACTCATG 252
Query 179 TCTCCATCTTCTTAATGAATCAAGTTTCAGTTAATGTTTTGCTTACATATAAGCTCTTTG 238
||||||| |||||| ||||||||||| | || |||| | ||| ||||||| ||||| | |
Sbjct 253 TCTCCATGTTCTTAGTGAATCAAGTTCCGGTAAATGATATGCCTACATATGAGCTCCTAG 312
Query 239 TCGTCAGTCAACTAGAGCGAAAATGGCACA-GCA-AGAGCAAAGACCAATTTGATACAAA 296
|||||||||||||||||||||||||||||| || || | ||| | ||||||| |||
Sbjct 313 TCGTCAGTCAACTAGAGCGAAAATGGCACACCCATGGA-C-GAGATGAGTTTGATATAAA 370
Query 297 TCCAGAACCGAG-TACTGAGGGG-TTTTATGAGTTCATAACTCTTGCTGATCTTAAGAGA 354
||||||||| || || ||||||| ||||| | ||||||| |||||||||||||| |||||
Sbjct 371 TCCAGAACC-AGCTAGTGAGGGGTTTTTAAG-GTTCATATCTCTTGCTGATCTTGAGAGA 428
Query 355 AACGGTTACC--------------T-TA---TTGGTGTCAAGTTTTATGAGATTGAACCT 396
|| |||| || | || |||||||||||||| ||| ||||||||||
Sbjct 429 AAAGGTTTCCTTATTGGAGATTGTTGTATGTTTGGTGTCAAGTTTCATGGGATTGAACCT 488
Query 397 GCTTATCCCGGGACAGCGGAATGTTTTAGCTTAATTGAGAAGCCTCTTAATCACAAAGTT 456
||| ||||||| ||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 489 GCTAATCCCGGAACAGCAGAGTGTTTTAGCTTAATAGAGAAGCCTCTTAACCACAAAGTC 548
Query 457 ACCTGGATGATGAGCAAGTTCTCGTCCTTTAACCCTGGAAAGGTC-CATCAGTCTAATGA 515
|| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||
Sbjct 549 ACTTGGATGATGAGCAAGTTCTCGTCCTTCAACCCTGGAAAGG-CTCATCAGTCTAATGA 607
Query 516 ATTTGTCGTTGGAACCAGGAAATGGAGAATTGAAGTTCATCCAAGAGGGTATAATG-AGG 574
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |
Sbjct 608 ATTTGTCGTTGGAACCAGGAAATGGAGACTTGAAGTTCATCCAAGAGGGTATA-TGGATG 666
Query 575 AAAAAGACAAATCATTTTCTGTGTATCTATCCGCAGAAGGGTTTGTCAAGAATGCACCAA 634
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 667 AAAAAGACAAATCATTTTCTGTGTATCTATCAGCAGAAGGGTTTGTCAACAATGCACCAA 726
Query 635 ACACAAAAACTTACGCGAGGTTCAAGCTGCGGGTATTGGATCAAGTTAGCTGGAATCATG 694
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TGACAAAAACTTACGCCAAGTTCAAGCTGCGGGTATTGGATCAAGTTAGCTGGAATCATG 786
Query 695 CTGAGAGAG-CAGGTACGGAG-TGGTTTGATGCAGAACCT--G-AGCAAAGTGGCTTCGC 749
|||| || ||||| | || |||||||||||||||||| | | ||||||||||| ||
Sbjct 787 TTGAG-GAATCAGGTTTG-AGCTGGTTTGATGCAGAACCTTCGGACCAAAGTGGCTTTGC 844
Query 750 GGATTTCATGCCTTTGGGGAAACTAGATGAACCTTATTTGGTGAAGGATAAGCTTTATGT 809
||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 845 GGATTTCATGCCTCTGGGGAAACTAAATGAACCTTATTTGGTAAAGGATAAGCTTTATGT 904
Query 810 GGGAGTTGAGTTTGAAGTTATTTCTACCACTAATTACTGTTAG 852
|||||||||||||||||| ||||||||||| |||||||||||
Sbjct 905 GGGAGTTGAGTTTGAAGTCGTTTCTACCACTTATTACTGTTAG 947
> AT4G01390.1 | Symbols: | TRAF-like family protein | chr4:570242-571595
REVERSE LENGTH=903
Length=903
Score = 804 bits (435), Expect = 0.0
Identities = 745/888 (84%), Gaps = 48/888 (5%)
Strand=Plus/Plus
Query 1 ATGGTGAGACTGTTTAAA-TCGCGTCACACAACATCTCAC-TCGTTCAAGATAGACAACT 58
|||||||||||||| ||| | |||||| ||||| ||||| | ||||||||||||| | |
Sbjct 28 ATGGTGAGACTGTTCAAAGT-ACGTCACGCAACAGCTCACAT-GTTCAAGATAGACCATT 85
Query 59 TCTCTCTACTCAAAAAGTATGGAATCGAAAAGGTCGAATCCTCTGTTTTCGATCTCGCTG 118
||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 86 TCTCTTTACTCAGAAAGCATGGAATCGAAAAGGTCGAGTCCTCTGTTTTCGATCTCGCTG 145
Query 119 GTCATAAATGGACACTCTCTGT-CTACCCAAATGGGCATA-AAAGTGCTAAGGGG--AC- 173
|||| ||||||| ||||||||| | |||||||||| |||| ||| |||||||||| ||
Sbjct 146 GTCACAAATGGAAACTCTCTGTGC-ACCCAAATGGCCATACAAA-TGCTAAGGGGACACA 203
Query 174 TCATGTCTCCATCTTCTTAATGAATCAAGTTTCAGTTA-ATGTTTTGCTTACATATAAGC 232
| |||||||| ||| |||||||||||||| || | || ||| | |||||||||| |||
Sbjct 204 TTATGTCTCCCTCTACTTAATGAATCAAG-CTCCGGTATATGATACGCTTACATATGAGC 262
Query 233 -TCTTTGTCGTCAGTCAACTAGAGCGAAAATGGCACA-GCAAGAGCAA-AGACCAATTTG 289
|| ||| |||||||||||| |||| ||||||||||| || | | || ||| ||| |
Sbjct 263 TTC-TTGCCGTCAGTCAACTTGAGCCAAAATGGCACACTCACG-G-AAGAGATGAATACG 319
Query 290 ATACAAATCCAGAACCGAGTACTGAGGGGTTTTATGAGTTCATAACTCTTGCTGATCTTA 349
| || ||| ||||| | ||| |||||||||| |||||||||| |||||| ||||||||
Sbjct 320 AAACCAATGAAGAACTGGGTAGTGAGGGGTTTCGTGAGTTCATATCTCTTGTTGATCTTA 379
Query 350 AGAGAAACGGTTACC--------------T-TA---TTGGTGTCAAGTTTTATGAGATTG 391
||| ||| |||| || | || ||||||||||||| ||| |||||
Sbjct 380 AGAAAAATGGTTTCCTTATTGGAGATTGTTGTATGTTTGGTGTCAAGTTCCATGGGATTG 439
Query 392 AACCTGCTTATCCCGGGACAGCGGAATGTTTTAGCTTAATTGAGAAGCCTCTTAATCACA 451
|||||||| | ||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 440 AACCTGCTAAACCCGGAACAGCGGAAAGTTTTAGCTTAATAGAGAAGCCTCTTAATCACA 499
Query 452 AAGTTACCTGGATGATGAGCAAGTTCTCGTCCTTTAACCCTGGAAAGGTCCATCAGTCTA 511
||| || |||||||||| || |||||||||||| ||||||||||| || ||||||||||
Sbjct 500 GAGTCACTTGGATGATGACCATGTTCTCGTCCTTCAACCCTGGAAACGTTCATCAGTCTA 559
Query 512 ATGAATTTGTCGTTGGAACCAGGAAATGGAGAATTGAAGTTCATCCAAGAGGGTATAATG 571
|||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||
Sbjct 560 ATGAATTTGTCGTTGGAACCCGGAAATGGAGAATTAAAGTTCATCCAAGAGGGTCT-ATG 618
Query 572 AG-GAAAAAGACAAATCATTTTCTGTGTATCTATCCGCAGAAGGGTTTGTCAAGAATGCA 630
| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct 619 GGTGAAAAAGACAAATCATTTTCTGTGTATCTATCGGCACTAGGGTTTGTCAATAATGCA 678
Query 631 CCAAACACAAAAACTTACGCGAGGTTCAAGCTGCGGGTATTGGATCAAGTTAGCTGGAAT 690
||||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 679 CCAAAGACTAAAACTTACGCGAGGTTCAAGCTGCGTGTATTGGATCAAGTTAGCAGGAAT 738
Query 691 CATGCTGAGAGAGCAGGTACGGAGT-GGTTTGATGCAGAACCTGA-G-CAA--AGTGGCT 745
|||| ||||| | || | ||| || || ||| |||||||||||| | | | |||||
Sbjct 739 CATGTTGAGAAAACAATTTCGG-GTTGGCTTGGTGCAGAACCTGATGACCGCCA-TGGCT 796
Query 746 TCGCGGATTTCATGCCTTT-GGGGAAACTAGATGAACCTTATTTGGTGAAGGATAAGCTT 804
| ||||||||||||||| | |||||| || ||||| ||||||||||||||||||||||||
Sbjct 797 TTGCGGATTTCATGCCTCTAGGGGAA-CTTGATGACCCTTATTTGGTGAAGGATAAGCTT 855
Query 805 TATGTGGGAGTTGAGTTTGAAGTTATTTCTACCACTAATTACTGTTAG 852
|||||||||||||| ||||| || ||||| | ||||||||||||||
Sbjct 856 TATGTGGGAGTTGACTTTGATGTCATTTCCGTCTCTAATTACTGTTAG 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5