BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895898
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01190.1 | Symbols: ATPIPK10, PIPK10 | phosphatidylinositol ... 1751 0.0
> AT4G01190.1 | Symbols: ATPIPK10, PIPK10 | phosphatidylinositol
phosphate kinase 10 | chr4:504211-506131 REVERSE LENGTH=1206
Length=1206
Score = 1751 bits (948), Expect = 0.0
Identities = 1125/1209 (93%), Gaps = 18/1209 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCTGAGAGCCACGGTGGAAAACCGAATTCGATACTCTACAAAACACATTAAACAC 60
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGCTGAGAGCCACGGTGGAGAATCGAATTCGATACTCTACAAAACACATTAAACAC 60
Query 61 TTGCCACCTGGCACAATCACTGAGTTTGATTGGAAGGATTACTGT-CCATTGGGTTTCGG 119
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 61 TTGCCACCTGGCTCAATCACTGAGTTTGATTGGAAGGATTACTGTCCCGTT-GGTTTCGG 119
Query 120 ACTTATACAAGAACTTGAGGGTATTGATCATGATGATTACTTGCTTTCCATTTGCACTGA 179
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 120 ACTTATTCAAGAACTTGAGGGTATAGATCATGATGATTACTTGCTATCCATTTGCACTGA 179
Query 180 TGAGACTATTAAGAAGCTTTCTTCTGGGAAAATTGGAAACGTCTTTCATATTTCCAATGA 239
||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TGAGACTCTCAAGAAGATTTCTTCTGGGAAAATTGGAAATGTCTTTCATATTTCCAATGA 239
Query 240 TAACCGTTTTCTCATCAAGATTCTTCGAAAATCCGAAATTAAGGTGACACTAGAGATGCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAACCGTTTTCTCATCAAGATTCTTCGAAAATCCGAAATTAAGGTGACACTAGAGATGCT 299
Query 300 TCCCCGTTACTACCGACATATTAACTATCACAGATCATCACTATTCTCAAGGATTTATGG 359
||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||
Sbjct 300 TCCACGTTACTACAGACATATTAATTATCACAGATCATCACTATTCACAAGGATTTTTGG 359
Query 360 TGTTCACGCTGTGAAGCCTGTTGGAGGTGTTAAGACATATTTTGCTGTCATGTCAAACAT 419
|| ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 360 TGCTCATTCTGTGAAGCCTCTTGGAGGTGTTAAGACATATTTTGCTGTGATGTCAAACAT 419
Query 420 GCTACATCCAACGGTCTTTATGAACAAGCTCTATGATCTTAAAGGTTCTCCGAAAGGTCG 479
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCTACATTCAACGATCTTTGTGAACAAGCTCTATGATCTTAAAGGTTCTCCGAAAGGTCG 479
Query 480 ATCTAACAAGAAAATTGAAGTCAGAAACACCACTGTTTTAAAGGACATCGATCTCGATTT 539
||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 480 ATCTAACAAGAAAATTGAAGTGAGAAACACCACTGTTTTGAAGGACATCGATTTCGATTT 539
Query 540 CTCTTTCTACGTTGATCCATTAGCCAGACAACGCATCATCAAGCAAACAAAGATAGATTG 599
|| ||||||||||||||| || || ||||||||||||||||||||||||||| |||||||
Sbjct 540 CTGTTTCTACGTTGATCCTTTGGCGAGACAACGCATCATCAAGCAAACAAAGCTAGATTG 599
Query 600 CGAGCTTTTGGAAGAAGAAGGTATAATGGATTATAGCTTATTGGTTGGTTTACAATCTAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGAGCTTTTGGAAGAAGAAGGTATAATGGATTATAGCTTATTGGTTGGTTTACAATCTAA 659
Query 660 AGGCTCATGTCAAGGTTCACTTGATGGATTGAACCCGGTTTACGGTAGCTGCGCACCTCC 719
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 AGGCTCATGTCAAGGTTCACTTGATGGATTGAACCCGGTTTACGGTAGCTTCGCACCTCC 719
Query 720 ATGCTCGTTCAAAAGCGCTAGCACAAAGTCGATGAAGACGGCTTCTAGTTCTCCTGATAG 779
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGCTCGTTCAAAAGCAATAGCACAAAGTCGATGAAGACGGCTTCTAGTTCTCCTGATAG 779
Query 780 ATCTTCTCTAACAATGTATTCATGCTCTCCCGATAGAGATAT-AGTAGAATGCGAAAAGT 838
||||||| || ||||||||||||||||||||||||||||| | ||| ||| ||||| ||
Sbjct 780 ATCTTCTGTAGCAATGTATTCATGCTCTCCCGATAGAGAT-TCAGTCGAAAACGAAATGT 838
Query 839 CAATGACTATACAATCAGTGACAAGCAATAGCTCAGAAACAAGTCAGATAAACaaaaaaa 898
|||||||||||||||||||||||||||||||| || | | ||||| || |||| | |
Sbjct 839 CAATGACTATACAATCAGTGACAAGCAATAGCGCA-AG-C---TCAGA-AA-CAAATATA 891
Query 899 GCATAGTAGC-AGCAACAATCAGTGACTTGTTTCACAATAGCTCAAATATCAGTTTTGGG 957
| |||| | ||||| |||||||| | |||||||||||||||||||||| |||||||
Sbjct 892 ---T--TAGCCA-CAACACTCAGTGACCTCTTTCACAATAGCTCAAATATCAATTTTGGG 945
Query 958 ATGAAGATTCCGGCCAAAGCACGGCGAGTGACGAGAGAGACCGGAGAAGAAGAATGGTAC 1017
||||||||||| || | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 946 ATGAAGATTCCAGCGAGGGCACGGCGAGTGACGAGAGAAACCGGAGAAGAAGAATGGTAC 1005
Query 1018 GATGTCGTTTTGTATATAGGGATCGTAGACACATTTCAAGACTATGGTATGAAGAAACGC 1077
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1006 AATGTTGTTTTGTATATAGGGATAGTAGACACATTTCAAGACTATGGTATGAAGAAACGC 1065
Query 1078 ATAGAACATTGTTACAAATCCATCCAACATAACTCAAACTCAATCTCGACCGTCCATCCT 1137
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 1066 ATAGAACATTGTTACAAATCCATTCAATATAACTCAAACTCAATCTCAACCGTCCATCCT 1125
Query 1138 AAGATCTACTCTTCTAGATTTCAAGACTTTGTCTCCAACATCTTCTTATCTCACGATGAC 1197
|||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||
Sbjct 1126 AAGATCTACTCTTCTAGATTCCAAGACTTTGTCTCCAACATCTTCCTACCTCACGACGAT 1185
Query 1198 GATCTCTCT 1206
|||||||||
Sbjct 1186 GATCTCTCT 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5