BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895902
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01130.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1777 0.0
> AT4G01130.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr4:485833-488007 FORWARD LENGTH=1184
Length=1184
Score = 1777 bits (962), Expect = 0.0
Identities = 1087/1149 (95%), Gaps = 2/1149 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCCGATCTAAACAGAAGAAGATCGTTCTCTCTTCTAGTCTTGATTATTGTGATG 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 ATGGCTTCCGATATAAACAGAAGAAGATCGTTCTCTCTTCTAGTCTTGATTATTGTGATG 95
Query 61 CTTTATGTGCACAAAGCTGATTCAAAATGTGATTTCGAAGCAATTTTCAACTTCGGAGAC 120
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 CTTTATGGGCATAAAGGTGATTCAAAATGTGATTTCGAAGCAATTTTCAACTTCGGAGAC 155
Query 121 TCGAATTCCGACACTGGCGGATTTTGGGCTGCTTTTCCGGCTCAATCCGGTCCATGGGGA 180
|||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 156 TCGAATTCGGACACTGGCGGATTTTGGGCTGCTTTTCCTGCCCAATCTGGTCCATGGGGA 215
Query 181 ATGACTTATTTCAAGAAACCGGCCGGTCGTGCTTCAGACGGTCGTCTCATCATTGATTTT 240
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 216 ATGACTTATTTCAAGAAACCAGCCGGTCGTGCTTCAGACGGTCGTCTTATCATTGATTTT 275
Query 241 CTCGCTAAATCTCTTGGAATGCCTTTCCTAAGCCCATATTTGCAATCTATTGGATCGGAT 300
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CTAGCCAAATCTCTTGGAATGCCTTTCCTAAGCCCATATTTGCAATCTATTGGATCGGAT 335
Query 301 TTCCGGCATGGCGCAAACTTTGCGACGTTAGCATCCACAGTTCTTTTGCCAAACACGTCT 360
|| || |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 336 TTTCGACATGGCGCAAACTTTGCGACGTTAGCGTCCACGGTTCTCTTGCCAAACACGTCT 395
Query 361 TTATTTGTCTCTGGAATAAGCCCTTTCTCACTCGCTATTCAGCTGAATCAGATGAAACAA 420
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TTATTTGTCTCCGGAATCAGCCCTTTCTCACTCGCTATTCAGCTGAATCAGATGAAACAA 455
Query 421 TTCAAGGTTAATGTCGACGAGTCACATTCTTTGGACCGACCAGGATTGAAGATCTTACCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TTCAAGGTTAATGTCGACGAGTCACATTCTTTGGACCGACCAGGATTGAAGATCTTACCG 515
Query 481 TCTAAAAATGTTTTCGGAAAATCGCTATACACGTTTTATATTGGCCAAAACGATTTCACA 540
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 516 TCTAAAATTGTTTTCGGAAAATCGCTATACACGTTTTATATTGGTCAAAACGATTTCACA 575
Query 541 TCCAATTTAGCGAGTATTGGAGTTGAGAGAGTGAAACAATATCTTCCACAAGTCATAGGC 600
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 576 TCCAATTTAGCCAGTATTGGAGTTGAGAGAGTGAAACTATATCTTCCACAAGTCATAGGC 635
Query 601 CAAATTGCTGGAACGATTAAGGAGATATATGGGATAGGTGGTCAGACATTTTTGGTATTA 660
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 636 CAAATTGCTGGAACGATTAAGGAGATATATGGAATAGGTGGTCGGACATTTTTGGTATTG 695
Query 661 AATTTAGCACCAGTTGGATGTTACCCGGCGATTTTAACCGGTTACACTCATACCGTTTCG 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 696 AATTTAGCACCGGTTGGATGTTACCCGGCGATTTTAACCGGTTACACTCATACCGATGCT 755
Query 721 GATTTAGACAAATTTGGATGTCTCATTCCTGTAAACAAAGCCGTCAAATATTACAACGCG 780
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 756 GATTTAGACAAGTATGGATGTCTCATTCCTGTAAACAAAGCAGTCAAATATTACAACACG 815
Query 781 TTACTGaaaaaaaCGTTATC-CGAAACCAGAACCGAACTAAGAAACGCTACCGTAATTTA 839
||| |||| || || ||||| | | |||||||||||||||| ||||||||||||||||||
Sbjct 816 TTATTGAATAAGACATTATCTC-AGACCAGAACCGAACTAAAAAACGCTACCGTAATTTA 874
Query 840 CTTAGACACTCACAAGATATTGCTCGACCTCTTTCAACACCCCAATTCCTACGGTATGAA 899
|||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 875 TTTAGACACGCACAAGATATTGCTTGATCTCTTTCAACACCCCAAATCCTACGGTATGAA 934
Query 900 ACACGGTATTAAAGCTTGTTGTGGATACGGTGGACGTCCATACAATTTCGATCAGAAGTT 959
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 935 ACACGGTATTAAAGCTTGTTGTGGATATGGTGGACGTCCATACAATTTCAATCAGAAGTT 994
Query 960 ATTTTGTGGTAACACCAAAGTGATTGAAAATTTTTCTGCGACGGCCAAAGCTTGCCGTGA 1019
||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 995 ATTTTGTGGCAACACCAAAGTGATTGGAAATTTTTCTACGACGGCCAAAGCTTGCCATGA 1054
Query 1020 TCCACACAATTACGTGAGCTGGGATGGAATTCATGCAACGGAGGCCGCAAACCACCACAT 1079
||| ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1055 TCCTCACAACTACGTGAGTTGGGATGGAATTCATGCGACGGAGGCCGCAAATCACCACAT 1114
Query 1080 TTCCACGGCCATTCTCGACGGTTCGATATCATATCCTCCGTTCATACTCAAGAACCTATG 1139
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1115 TTCCATGGCCATTCTCGACGGTTCGATATCATATCCTCCGTTCATACTCAATAACCTATG 1174
Query 1140 CCCGCCTTA 1148
|||||||
Sbjct 1175 TTCGCCTTA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5