BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895931
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00890.1 | Symbols: | proline-rich family protein | chr4:37... 427 2e-118
> AT4G00890.1 | Symbols: | proline-rich family protein | chr4:373960-375350
REVERSE LENGTH=1391
Length=1391
Score = 427 bits (231), Expect = 2e-118
Identities = 291/320 (91%), Gaps = 4/320 (1%)
Strand=Plus/Plus
Query 272 TGTCGCCGTTATCACCAAAATCAAAGGAAGAGCCTCAATCGCAGCCAATGCCACCACTGA 331
||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||
Sbjct 185 TGTCGCCGTTATCACCAAAATCAAAGGAAGAGCCTGAATCACAGACAATGACACCACTGA 244
Query 332 CGTCAAAACATGTCAAAACACACCGGAATCTACTTATCCAATCACCTCCTAAGTCGCCGC 391
||||||||||||||||||||| || || || |||||||||||||| |||||||||||||
Sbjct 245 TGTCAAAACATGTCAAAACACATCGAAACCTTCTTATCCAATCACCACCTAAGTCGCCGC 304
Query 392 CAGAATCCACTAAATCTCAGCAGCAATTACTAGCATCGGTGCCTCCTCCACCGCTAACAC 451
||||||||||| |||||||||||||||| |||||||| ||||||| || ||||||||||
Sbjct 305 CAGAATCCACTGAATCTCAGCAGCAATTTCTAGCATCAGTGCCTCTTCGACCGCTAACAA 364
Query 452 CAGAAGCAAAAACACCATTGTCCCCCTCGTCAACGCTAAAGTCTACCGAAGAATCTCAGT 511
||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 365 CAGAACCAAAAACACCATTGTCCCCCTCGTCAACCCTAAAGGCTACCGAAGAATCTCAGT 424
Query 512 CCCAACCGTCTCCACCGCTTAAATCTATTGACGAAACTCGGTTCC-ATCCATCGCCTCCA 570
|||||||||||||||||||| ||||||| | |||||| |||||| | ||||||||||||
Sbjct 425 CCCAACCGTCTCCACCGCTTGAATCTATCGTTGAAACTTGGTTCCGA-CCATCGCCTCCA 483
Query 571 ACATCATCA-AAATCTGGTG 589
|||||| || ||| ||||||
Sbjct 484 ACATCAACAGAAA-CTGGTG 502
Score = 207 bits (112), Expect = 3e-52
Identities = 142/157 (90%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 1544 AATCTGATAAACAAGCAAGATCTCAGACACACTCATCACCACCAGCAACGCCATTGTTGT 1603
||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 752 AATCTGATAAACAAGCAAGATCTCAGACACACTCATCACCATCACCACCGCCACTGTTGT 811
Query 1604 CTCCGAAAGCTAGTGAAAACCACCAATATCAATCACCTATGCCACCACCATCTCTGACGG 1663
| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 812 CGCCGAAAGCTAGTGAAAACCACCAATCTAAATCACCTATGCCACCACCATCTCCGACGG 871
Query 1664 AACAGAGGTCACCATCGCCGATGAAATCACCAATTCC 1700
||||| |||| |||| | ||||||||||||||||
Sbjct 872 CACAGATATCACTATCGTCTCTGAAATCACCAATTCC 908
Score = 132 bits (71), Expect = 2e-29
Identities = 126/152 (83%), Gaps = 5/152 (3%)
Strand=Plus/Plus
Query 1065 ACCGCCACCAGAAGCTAAAGTTACATCGCCTCCGCCGTC---GACGCAAAACGCTACAGA 1121
||| |||| |||||| ||| | || || || ||||||| || | ||||||||| ||
Sbjct 525 ACCACCACAAGAAGCCAAAACTCCACCGTCTTCGCCGTCAATGATGTTAAACGCTACTGA 584
Query 1122 AAAATCCCAGCCCCAACTGCCACCACCGCTTTTGCCATCTAAATCCATAGACGAAACTCG 1181
| ||| | || |||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 585 AGAATTCGAGTCCCAACCGAAACCACCGCTTTTGCCGTCTAAATCCATAGACGAAACTCG 644
Query 1182 GCTCCGATCACCGCTTCA-GTCGCAAGCATCG 1212
|||||||||||||||| | |||||||||||||
Sbjct 645 GCTCCGATCACCGCTT-ATGTCGCAAGCATCG 675
Score = 126 bits (68), Expect = 7e-28
Identities = 151/187 (81%), Gaps = 21/187 (11%)
Strand=Plus/Plus
Query 1731 ACCGTCACCTAAACCATTGGTACCCCAAATTAAACCTAA-CAAAGTCAAATCTCCTCCTC 1789
||||||||||||||||| | ||||||||||| ||||||| |||| ||||||||||| |||
Sbjct 969 ACCGTCACCTAAACCATCGTTACCCCAAATTGAACCTAACCAAA-TCAAATCTCCTTCTC 1027
Query 1790 CAAAACTTATAAACAACGAATCTCACACTTCACCAGATCATAAAAAGGATCAAAACCACA 1849
||||||| | ||||| |||||||||| ||||||||| | | || |
Sbjct 1028 CAAAACTCACAAACACCGAATCTCACGCTTCACCAG---------A-G--------CAGA 1069
Query 1850 ATCCAGAGAAACCTGACGCCAACCTCATGAACAAGAATCCGCCTAAAAATGAAGTTCAGA 1909
||| || ||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||
Sbjct 1070 ATCTAGTGAAACCTGACGCCAACCTCATGAACAAGATTCCGGCTAAAAACGAAGTTCCGA 1129
Query 1910 AAA-CAG 1915
||| |||
Sbjct 1130 AAAACAG 1136
Score = 73.1 bits (39), Expect = 1e-11
Identities = 60/69 (87%), Gaps = 6/69 (9%)
Strand=Plus/Plus
Query 1429 CCACCGCCTTTGCCGTCTAAATCCATTGATGAAAC--A--C--GGTCCCAATCACCTCCG 1482
||||| |||||||||||||||||||||||||||| | | ||||||||||||| |||
Sbjct 679 CCACCTCCTTTGCCGTCTAAATCCATTGATGAAAATGAAACAAGGTCCCAATCACCGCCG 738
Query 1483 ATTTCGCCA 1491
|||||||||
Sbjct 739 ATTTCGCCA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102760515615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5