BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895934
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1845 0.0
> AT4G00870.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:362169-363691 REVERSE LENGTH=1385
Length=1385
Score = 1845 bits (999), Expect = 0.0
Identities = 1186/1275 (93%), Gaps = 17/1275 (1%)
Strand=Plus/Plus
Query 1 ATGTATAATCTCACTTTCTCTCCATCATTGTCCTCTTCTCCGCTCTCTTTTACACAACAA 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 53 ATGTATAATCTCACTTTCTCTCCATCATTGTCCTCTTCTTTGCTCTCTTTTACACAACAA 112
Query 61 ACT-C--CAGCCATAGTGTCCTCTTCTCCGGCGGATCTAGCACTTCAACAAAAACTCCGG 117
||| | |||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 113 ACTCCTGCAGCCATAGTGTCCTCTTCTCCTCCGGATTTAGTACTTCAACAAAAACTCCGG 172
Query 118 TTTGTCGTGGAAACCTCACCGGACCGATGGGCTTACATCATTTTCTGGCACAAGATGTTT 177
||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 173 TTTGTCGTGGAAACCTCACCGGACCGATGGGCTTATGTCATTTTTTGGCAAAAGATGTTT 232
Query 178 GATGAACCATCGAACCGGTCTTACTTGGTTTGGGTTGACGGTCATTTCTGTGGAAACAAG 237
||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 233 GATGATCAATCGGACCGGTCTTACTTGGTTTGGGTTGATGGTCATTTCTGTGGAAACAAG 292
Query 238 AACAACAAATCCCAAGAAAATTATACAACTAACAGCATCGAGTGTGAGCTGATGATGGAC 297
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 293 AACAACAATTCCCAAGAAAATTATACAACAAACAGCATCGAGTGTGAGCTGATGATGGAC 352
Query 298 GGTGGAGATGATCTGGAGTTGTTCTATGCCACATCGTTTTACAGTGAAGATGGATCGCCG 357
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 353 GGTGGAGATGATCTGGAGTTGTTCTATGCCGCATCGTTTTACGGTGAAGATAGATCGCCG 412
Query 358 AGAAAGGAAATATTCGATGAATCTTTGGTTTGGCTAACCGGTCTCGACGAGCTCCGGTTT 417
||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 413 AGAAAGGAAGTATCCGATGAATCTTTGGTTTGGTTAACCGGTCCCGACGAGCTCCGGTTT 472
Query 418 AGCAACTACGAGAGGGCTAAAGAAGCCGGTTTTCACGGGGCACACACATTGGTCTCCATA 477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 473 AGCAACTACGAGAGGGCTAAAGAAGCCGGTTTTCACGGGGTACACACATTGGTCTCCATA 532
Query 478 CCCATCAACGATGGCATTATCGAACTTGGTTCGTCTGATTCAATTATACAAAACCGGAAC 537
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 533 CCCATCAACAATGGCATTATCGAACTTGGTTCGTCTGAATCAATTATACAAAACCGGAAC 592
Query 538 TTTATAAACCGGGTCCAGTCGATATTTGGGTCGGGTAAAACCCCAGAACACACTAACCAA 597
||||||||||| ||| |||| ||||| |||||||||||||| || ||||||||||||||
Sbjct 593 TTTATAAACCGAGTCAAGTCCATATTCGGGTCGGGTAAAACAACAAAACACACTAACCAA 652
Query 598 ACCGGTTCTGATCCGAAGCCGGCGGAATCAGATCACTCAG-AAATCGGAAATCGGCAA-T 655
||||||||| | || || ||||||| ||||||||| || | ||| |||||||| |||| |
Sbjct 653 ACCGGTTCTTACCCTAAACCGGCGGTATCAGATCATTC-GAAAAGCGGAAATCAGCAATT 711
Query 656 CGGGATCGGAAAGAAAACGGAGGAGGAAACTTGAGACGATGAA-TGTAGCTGTGGCGGCG 714
|||| |||||||||||||||||||||||||||||||||| || ||||||| |||| ||
Sbjct 712 CGGG-TCGGAAAGAAAACGGAGGAGGAAACTTGAGACGA-CAAGGGTAGCTGCGGCGACG 769
Query 715 GAAGAGAAACATCATCCGCCGGTTTTGTCCCATGTGGAGGCGGAGAGGCAACGGCGAGAG 774
||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||| |||||
Sbjct 770 AAAGAGAAACATCATCCGGCGGTTTTGTCCCACGTGGAAGCGGAGAAGCAACGGAGAGAG 829
Query 775 AAGCTAAACCACCGGTTTTACGCTCTACGTGCCATCGTACCAAAAGTGTCACGAATGGAC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AAGCTAAACCACCGGTTTTACGCTCTACGTGCCATCGTACCAAAAGTGTCACGAATGGAC 889
Query 835 AAAGCGTCACTCTTATCCGATGCCGTTTCGTACATCGAAAGTCTTAAATCCAAAATCGAT 894
||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 890 AAAGCGTCACTTTTATCCGACGCAGTTTCGTACATAGAAAGTCTTAAATCCAAAATCGAT 949
Query 895 GATCTCGAAACTGAGATCAAGAAATTGAGGACGACGATGACGAAGACAGATAAATTAGAC 954
|||||||||||||||||||||||| ||| | || ||||| |||||||||||||||||
Sbjct 950 GATCTCGAAACTGAGATCAAGAAAATGA--A-GA---TGACGGAGACAGATAAATTAGAC 1003
Query 955 AATAACAGCAGCAATACGTCTCCGTTTTCCGTTGAGTACCAAATCAACCAGAAACCTTCA 1014
|| | |||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 1004 AACAGCAGCAGCAATACGTCTCCGTCTTCCGTTGAGTACCAAGTTAACCAGAAACCTTCA 1063
Query 1015 GAATCAAACAGAGTCTCTGACTTGGAAGTGCAAGTGAAGATCGTCGGAGACGAAGCCATA 1074
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1064 AAATCAAACAGAGGCTCTGACTTGGAAGTGCAAGTGAAGATCGTCGGAGAAGAAGCCATA 1123
Query 1075 ATTAGGGTTCAGACAGAGAATGTGAACCATCCAACGTCGGCATTGATGAGTGCGTTAATG 1134
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1124 ATTAGGGTTCAGACAGAGAATGTGAACCATCCTACGTCGGCATTGATGAGTGCGTTAATG 1183
Query 1135 GAAATGGATTGCCGTGTACAACACGCGAATGCGTCGCGCTTGAGTCAGGTTATGGTTCAA 1194
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1184 GAAATGGATTGTCGTGTACAACACGCGAACGCGTCGCGCTTGAGTCAGGTTATGGTTCAA 1243
Query 1195 GATGTTGTCGTTTTGGTTCCAGAAGGATTAAGATCCGAAGATGGGCTTAGGACCACACTT 1254
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1244 GATGTTGTTGTTTTGGTTCCAGAAGGATTAAGATCGGAAGATAGGCTTAGGACCACACTT 1303
Query 1255 -TCCCGAAACCTAAG 1268
||| ||| ||||||
Sbjct 1304 GTCC-GAACCCTAAG 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5