BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895935

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00860.1 | Symbols: ATOZI1, AT0ZI1 | Protein of unknown func...   372    9e-103


> AT4G00860.1 | Symbols: ATOZI1, AT0ZI1 | Protein of unknown function 
(DUF1138) | chr4:359315-360493 REVERSE LENGTH=596
Length=596

 Score =  372 bits (201),  Expect = 9e-103
 Identities = 230/244 (94%), Gaps = 2/244 (1%)
 Strand=Plus/Plus

Query  1    ATGTCAAGATCTACATACATAATCGGTGCCCTTGCGGGATCTGCGGTAGTAGCTTACGTG  60
            ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATGTCGAGAGCTACATACATTATCGGTGCCCTTGCGGGATCTGCGGTAGTAGCTTACGTG  180

Query  61   TGTGACAAAGTTATTTCTGATAATAAGCTTTTCGGAGGTACTACACCTGGAACTGTTTCT  120
            ||||||||||||||||||||| |||||||||| |||||||||||||| |||||| || ||
Sbjct  181  TGTGACAAAGTTATTTCTGATGATAAGCTTTTTGGAGGTACTACACCAGGAACTATTACT  240

Query  121  AACAAGGAATGGTGG-GCTGCGACTGAAGAGAAATTCCAAGCATGGCCAAGAGTTGCTGG  179
            |||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  241  AACAAGGAATGG-GGTGCTGCGACTGAAGAGAGATTACAAGCATGGCCAAGAGTTGCTGG  299

Query  180  TCCTCCTGTCGTGATGAACCCTATCAGTCGCCAGAATTTCATCGTCAAGTCACGTCCTGA  239
            |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TCCTCCCGTCGTCATGAACCCTATCAGTCGCCAGAATTTCATCGTCAAGTCACGTCCTGA  359

Query  240  ATAA  243
            ||||
Sbjct  360  ATAA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5