BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895945
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00760.1 | Symbols: APRR8, PRR8 | pseudo-response regulator ... 1526 0.0
> AT4G00760.1 | Symbols: APRR8, PRR8 | pseudo-response regulator
8 | chr4:327025-333477 REVERSE LENGTH=3285
Length=3285
Score = 1526 bits (826), Expect = 0.0
Identities = 990/1065 (93%), Gaps = 28/1065 (3%)
Strand=Plus/Plus
Query 57 AGACAGCGATGCAACATGTCTGGCGAATCTGTCAGAGATGATACGCAAATGCGGATATAG 116
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 AGACAGCGATGCGACATGTCTGGCGAATCTGTCAGAGATGATACGCAAATGCGGATATAA 2086
Query 117 AGTTGTGGCTACTACAAGAGCTGAGGATTTGCCGCTTATCATCAATAACAAAGATAAAAA 176
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2087 AGTTGTGGCTACTACAAGAGCTGATGATTTGCCGCTTATCATCAATAACAAAGATAAAAA 2146
Query 177 GATTGATCTTGTACTGGCAGATTTCCGCTTGATTGAGATGAACAAGTATGAACTTCTTGA 236
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GATTGATCTTGTACTGGCAGAGTTCCGCTTGATTGAGATGAACAAGTATGAACTTCTTGA 2206
Query 237 GAAAATCAGGTTGATTTGTGAGATTCCGGTTGTTGTTTCGGATGCATATGTGAAAGATGC 296
||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 2207 GAAAATCAGGTCGATTTGTGAGATTCCGGTTGTTGTTTCGGGTGCACATGTCAAAGATGC 2266
Query 297 CATTGTAGAATGTCTGTGCAGAGGTGCCAAATTGTGTCTGGAGAAGCCGTTTAAGGAGAA 356
||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 2267 CATTGTAGAATGTCTGTGCAGAGGTGCCAAATTGTGTCTGGAGAAGCCGCTCATGGAGAA 2326
Query 357 TCACTT-AAAACTTCTGTGGCAGTTTACAGTCAGGAGACAGCGAGACTTTCTTAGTCAAA 415
| |||| |||| |||||||||||||||||||||| ||||||||| |||||| ||||||||
Sbjct 2327 TGACTTCAAAA-TTCTGTGGCAGTTTACAGTCAGTAGACAGCGAAACTTTCGTAGTCAAA 2385
Query 416 TTGACATCAACCCACCTGAGAAAAATTATTCAATCACCAACAATCAATCTCTTGGAGATG 475
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||
Sbjct 2386 TTGACATCAACCCACCTGAGAAAAATCATTCAATCACCCACACTCAATCTCTTGGAGCTG 2445
Query 476 AGCTTAAGAAAAATAAC-------G--AAGTTGAAACAGAAGATCTTGATAAGTTCAAAG 526
||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 2446 AGCTTAAGAAAAATAACAATAACAGCGAAGTTGAAACAGAAGATCTTGATAAGTACAAAG 2505
Query 527 ATGAACTCGGACAAGGTAACAAAAGAAAGGAAAGAGCGGATAAAGATACTGGAGAACATA 586
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2506 ATGAACTCGGACAAGGTAACAAAAGAAAGGAAAGAGCGGATACAGATACTGGAGAACATA 2565
Query 587 CAGAGAAGAATAATGGCTCTGATTTGGGAGACCAAAAGAAGCCAAAACTTATTTCTGCAG 646
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2566 CAGAGAAGAATAATGGCTCTGATTTGGGAGACCAAAAGAAGCCAAAACTTCTTTTTGCAG 2625
Query 647 ATG-CCTTACAAACCGAAACTTTAGAAGCTGTCCCAAATATAGAAGAAGCCAACAGTGAA 705
||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2626 ATGACCT-ACAAAACGAAACTTTAGAAGCTGTCCCAAATATAGAAGAAGCCAACAATGAA 2684
Query 706 AGAAAGGAACCAGCAGAGATAAAGAAGAATGGAGAAGGTAGTGAGAAGAAGAGCCCAGAA 765
||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2685 AGAAAGGCACCAACAGAGATAAAGAAGAATGGAGAAAGTAGTGAGAAGAAGAGCCCAGAA 2744
Query 766 CTGGTTTGTATGGAGGAGGAACTTCAAAATTGGTCCTCTCAACCATTGATTGATTTAACT 825
||||||||||||||||||||||||||||| ||||| || || |||| ||||||||||||
Sbjct 2745 CTGGTTTGTATGGAGGAGGAACTTCAAAAGTGGTCAGCTGAATCATTTATTGATTTAACT 2804
Query 826 GCTTCTGTGGAAAATGAATTCGAAGACCAAGATTTTCTGCCTTTGGAGAGCAATGGGGAG 885
||||||||||||||||||| | |||||| | || |||||||| ||||||
Sbjct 2805 GCTTCTGTGGAAAATGAAT-C-----CCAAGA----C--CCACTGGAGAGCGTTGGGGAT 2852
Query 886 TCTGTGGGACCTCATGAGATTCCATTGAGTCCGCAAGAGTCCTCAAACAAGAATGTTGCT 945
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2853 TCTGTGGGACCTCATGAGATTCCATTGAGTCCGCCAGAGTCCTCAAACAATAATGTTGCT 2912
Query 946 GCTCAGCAACAAATGCCGACACATGAAGCATTAGATGAAGAAGTGATGCAGGATGGAATC 1005
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2913 GCTCAGCTACAAATGCCGACACATGAAGCATTAGATGAAGAAGTGATGCAGGATGGACTC 2972
Query 1006 AGCCTCTCTGACCTCGAATTTGATCCGCAGGAGGAGGGACAGGGCTCAAATAAGGAGCTT 1065
|||||||||||||||||| |||||| |||||||| | ||| ||||||||||||||||||
Sbjct 2973 AGCCTCTCTGACCTCGAAGTTGATCTGCAGGAGG-G--ACATGGCTCAAATAAGGAGCTT 3029
Query 1066 TTCGATAAGATCTTCACCGATCTCGCCAAAGAGCTTAAACCTTAA 1110
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3030 TTCGATAAGATATTCACCGATCTCGCCAAAGAGCTTAAACCTTAA 3074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5