BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895963
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00560.4 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1343 0.0
> AT4G00560.4 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr4:240660-242351 REVERSE LENGTH=1218
Length=1218
Score = 1343 bits (727), Expect = 0.0
Identities = 893/969 (92%), Gaps = 27/969 (3%)
Strand=Plus/Plus
Query 13 AAAGTGGTAATTGTCGGAGGTACGGGATACTTGGGTCAGCATCTGCTTCAAGCTTTCGCC 72
|||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 100 AAAGTGCTAATTGTGGGAGGTACTGGATACTTGGGTCAGCATCTTCTTCAAGCTTTCGCC 159
Query 73 GGCAACAATGGCGGTG-A--T---CTATACGACGTCGCTTTCACTCACCACTCTTCTCCA 126
|||||| ||||||||| | | |||||||||||||||||||||||||| |||||||||
Sbjct 160 GGCAACTATGGCGGTGAATGTGAGCTATACGACGTCGCTTTCACTCACCATTCTTCTCCA 219
Query 127 CTTCCCCGC-CGTTTACTCGACGCATTCCCTCATTTCCCCGCGTTTCCTGTCGATCTCAA 185
||| ||||| ||||| |||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct 220 CTT-CCCGCTCGTTTGCTCGACGCTTTCCCTCATTCCCCCGCGTTTCCTGTCGATCTTAA 278
Query 186 ATCCGGTTTAGGGTTCAATTCCATATCCCAGGACTTTGGTCAGCCTGATGTGGTCGTGAA 245
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 279 ATCCGGTCTAGGGCTCAATTCCATATCCCAGGACTTTCGTCAGCCTGATGTGGTCGTGAA 338
Query 246 TTGTGCTGCTCTGTCTGTTCCACGAGCTTGCGAGCAAGATCCAGATTCCGCCATGTCCAT 305
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 339 TTGTGCTGCTCTGTCTGTCCCACGAGCTTGCGAGCAAGATCCAGATTCCGCCATGTCCAT 398
Query 306 CAACGTGCCTTCTTGTCTTGTAAACTGGTTATCAACTTTTGAGAGAAACAAAACCTTGTT 365
|||||| ||| ||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 399 CAACGTACCTACTTCTCTTGTAAACTGGTTATCAAGTTTTGAGACTAACAAAACCTTGTT 458
Query 366 GATTCATCTCTCTACTGATCAAGTATATGAAGGTGTCAAGTCTTTCTACAAGGAAGAAGA 425
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 459 GATTCATCTCTCTACTGATCAAGTTTATCAAGGTGTCAAGTCTTTCTACAAGGAAGAAGA 518
Query 426 TGAGACTGTTGCAGTCAATGTTTATGGGAAATCAAAAGTTGCAGCAGAGCTTCTCATCAA 485
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAGACTGTTGCAGTCAACGTTTATGGGAAATCAAAAGTTGCAGCAGAGCTTCTCATCAA 578
Query 486 GGATAAGTGTCAGAA-CTTTGCAATACTGAGAAGTAGTATCATCTTTGGTCCTCAGACTG 544
|||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 579 GGATAAGTGTCA-AAGCTTTGCAATATTGAGAAGTAGTATCATCTTTGGTCCTCAAACTG 637
Query 545 TATCACCTCTCCCAAAGACTCTCCCAATTCAGTGGATTGATAGCTCCTTGAAGAA-GGGA 603
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 638 TATCACCTCTCCCCAAGACTCTCCCAATTCAGTGGATTGATAGCTCCTTAAAGAAAGGG- 696
Query 604 GACACGGTAGAGTTCTTCCATGATGAGTTTCGTTGCCCCATTTACGTTAAGGATCTCGTG 663
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 697 GACACGGTAGACTTCTTCCATGACGAGTTTCGTTGCCCCATTTACGTTAAGGATCTTGTG 756
Query 664 AATATCACTTTGAAATTAATAGACAGATGGGTCGTCTCAGATGAAAAACAGATGCAGCTG 723
||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||| |||
Sbjct 757 AATATCACTTTCAAATTAATAGACAGATGGGTC-TCT--GATGATAAACAGATGCGGCTA 813
Query 724 GTTTTGAATGCTGGTGGACCTGAGAGGCTATCTCGTGTTCAAATGGCTCAAGTGGTTGCA 783
||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 814 GTTCTGAATGCTGGTGGACCCGAGAGGCTATCTCGTGTTCAAATGGCTCAAATGGTTGCA 873
Query 784 GAAGTCAGAGGATACGACATGTCTTTGATTAAACATGTGTCTGCATCATCG-------GT 836
|||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 874 GAAGTCAGAGGATACGACCTGTCCTTGATTAAACATGTGTCTGCATCATCGCTATTTTGT 933
Query 837 ----T-GATCGAGGTGTGGTGTCACCAGCAGATATATCTATGGACATAACTAAACTGATT 891
| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 CAGATTGATCGTGGCGTAGTGTCACCAGCAGATATATCTATGGACATAACTAAACTGATT 993
Query 892 CAGACACTTGAGATCTCTCCAACTTCTTTCAAAGATGGTGTTAGATTAACCCTTGAGTCT 951
|| ||||||||| ||||||||||||||||||| || |||||||| ||||| ||||| |||
Sbjct 994 CATACACTTGAGCTCTCTCCAACTTCTTTCAAGGAAGGTGTTAGGTTAACGCTTGACTCT 1053
Query 952 GAATCTCAT 960
|||||||||
Sbjct 1054 GAATCTCAT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5