BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895972
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00520.2 | Symbols: | Acyl-CoA thioesterase family protein ... 1834 0.0
> AT4G00520.2 | Symbols: | Acyl-CoA thioesterase family protein
| chr4:227694-231699 FORWARD LENGTH=1515
Length=1515
Score = 1834 bits (993), Expect = 0.0
Identities = 1191/1286 (93%), Gaps = 16/1286 (1%)
Strand=Plus/Plus
Query 1 ATGAACACTGAATCAGTTGTCGAGTTCCTTGGGAATGT-ACCCTTATTGCAGCGGTTACC 59
|||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 33 ATGAACACTGAATCAGTTGTCGAGTTCCTTGGGAATGTGA-CCTTGTTGCAGCGGTTACC 91
Query 60 TAGTTCTTCTCTCACGAGAATCGCTGAAGTTGTTGTCTTCAAACGTTATGAGAGAGGTGA 119
|||||| ||||| | ||||||| | ||||| |||||||||||| ||||||| ||||||||
Sbjct 92 TAGTTCCTCTCTGAAGAGAATCTCCGAAGTCGTTGTCTTCAAAGGTTATGACAGAGGTGA 151
Query 120 TTATGTGGTTCGTAAAAATCAGGATGTAGATGGAGTTTATTTTCTCTTGGAAGGACAGGC 179
||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 152 TTATGTGGTTCGTGAAAATCAAAATGTGGATGGAGTTTATTTTCTCTTGCAAGGACAGGC 211
Query 180 TCAGGTTCTGAGATCAGCTGGAGAGGAAAACTCTCAACAGTTCCTTTTGAAACGAT-TCG 238
|||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||| | |
Sbjct 212 TCAGGTTCTGAGATCAGCCGGAGAGGAAAACTATCAAGAGTTCCCTTTGAAACGATAT-G 270
Query 239 ATTTCTTCGGCCCTGGTATTTTTGGGGATGTTTACTCAGCAGATGTTGTTGCAGTCTCAG 298
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 271 ATTTCTTCGGCCATGGTATTTTCGGGGATGTTTACTCAGCAGATGTTGTTGCTGTGACAG 330
Query 299 AGCTCACCTGCTTATTGTTGATGTCTGATCATCGTGCTTTGCTTGAGAA-AAAGTCAGTC 357
|||| |||||||| ||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 331 AGCTTACCTGCTTGCTGTTGATGTCTGATCATCGTGCTTTACTTGA-AATAAAGTCAGTC 389
Query 358 TCGGATTCAGATAAGGAACGATGTCTTGTGGAACACATATTGTATCTAGAACCATTAGAT 417
|||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||||
Sbjct 390 TCGGATTCAGATAAGGAACGCTGTCTTGTGGAAGACATACTATATCTAGAACCATTAGAT 449
Query 418 TTGAATGTATTCCGGGGGTTCACTCCACCCAATGCTCCAACCTATGGAAAGGTTTATGGA 477
|||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 450 TTGAATGTATACCGGGGGTTCACCCCACCTAATGCTCCAACCTATGGAAAGGTTTATGGA 509
Query 478 GGGCAGTTAGTTGGACAGGCACTCGCCGCAGCATCAAAAACTGTTGAAAATATGAAGATA 537
||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 510 GGGCAATTAGTTGGACAGGCACTTGCCGCAGCATCAAAAACTGTTGAAACTATGAAGATA 569
Query 538 GTCCATAATTTACATTCCTATTTCCTTCTTGTTGGAGAGATAAATATTCCCATCATATTT 597
||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 570 GTCCATAATTTTCATTGCTATTTCCTTCTTGTTGGAGATATAAATATTCCCATCATATAT 629
Query 598 GAAGTTATCCGCTTACGTGACGGCAATAACTTTGCCACCAGAAGAGTAGATGCTAGACAG 657
|| |||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 630 GATGTTAACCGCTTACGTGACGGCAACAACTTTGCCACCAGAAGTGTAGATGCTAGACAG 689
Query 658 AAAGGAAAAACCATATTCATCTTGTTCGCGTCATTTCAGAGAAAGCAACAAGGTTTTATT 717
||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 690 AAAGGAAAAACTATATTCACCTTGTTCGCGTCATTTCAGAAAAAGCAACAAGGTTTTATT 749
Query 718 CACCAGGAGTCGATCATGCCTCATACACCAGCTCCTGAAATGCTTCTACCAAGGGAGGAG 777
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 750 CACCAGGAGTCGACCATGCCTCATACACCAGCTCCTGAAACGCTTCTACCAAGGGAGGAG 809
Query 778 ATGCTTGAGCGGCGTATAACTGACCCTCTTCTACCTAGGGATTACCGAAACAAAGTTGCA 837
|||||||| |||| | | ||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 810 ATGCTTGAACGGCTTGTTACTGAGCCTCTGCTACCTAGGGATTACCGAAACCAAGTTGCA 869
Query 838 AATGAAATTAATGCTT-CATTCCCTATAGATATTCGATTTTGTGAGCCAAATTATTCTAC 896
| |||||||| || || ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 870 ACTGAAATTAGTG-TTCCATTCCCTATAGATATTCGATTTTGTGAGCCAAATCGTTCCAC 928
Query 897 -AGAACAGACA-AAGTCTCCTCCAAGACTGAAATATTGGTTTAGAGCAAAGGGAAAACTT 954
| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 929 TA-AACAGA-ATAAGTCTCCTCCAAGACTAAAATATTGGTTTAGAGCAAAGGGAAAACTT 986
Query 955 TCTGATGATGATCAAGCTTTGCACAGATGTGTGGTTGCGTATGCTTCAGATTTGATATTC 1014
|||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 987 TCTGATGATGATCAAGCTTTGCACAGATGTGTGGTTGCATTTGCTTCCGATTTGATATTC 1046
Query 1015 GCCTCTATCAGTTTAAACCCTCACCGCAGAGAGGGCATGCGTGTAGCTGCTCTTAGCCTG 1074
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1047 GCCACTATCAGTTTAAACCCTCACCGGAGAGAGGGCATGAGTGTAGCTGCTCTTAGCCTG 1106
Query 1075 GACCACTCGATGTGGTTCCACCGACCTCTAAGAGCTGATGATTGGTTGTTGTTTGTGATA 1134
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1107 GACCACTCGATGTGGTTCCACCGACCTGTAAGAGCAGATGATTGGTTGTTGTTTGTGATA 1166
Query 1135 GTGAGTCCAA-T-CGCATCCGAAAGCCGCGGTTTTGCCACTGGAAAAATGTTCAACAGAA 1192
|||||||||| | || | ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1167 GTGAGTCCAACTGCG-A-CCGAAAGCCGCGGTTTTGCAACTGGCAAAATGTTCAACAGAA 1224
Query 1193 AGGGAGAGCTGGTGGTATCATTGACGCAAGAAGCTGTGCTAAGAGAAGCTGTGACTATAA 1252
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1225 AGGGAGAGCTGGTGGTATCATTGACGCAAGAAGCTGTGTTAAGAGAAGCTGTGACTATTA 1284
Query 1253 AGCCCTCCTTCGGCGCGAAGCTCTGA 1278
|||| |||||||| || ||||| |||
Sbjct 1285 AGCCATCCTTCGGGGCCAAGCTATGA 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5