BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895990
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16650.1 | Symbols: | Transducin/WD40 repeat-like superfami... 494 4e-139
AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1 | ... 464 3e-130
> AT3G16650.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:5671067-5675324 FORWARD LENGTH=1724
Length=1724
Score = 494 bits (267), Expect = 4e-139
Identities = 410/477 (86%), Gaps = 17/477 (4%)
Strand=Plus/Plus
Query 7 GCTGTAAGCAACAGGCATACCTATATGTTCTCTTCTGGCGATGACAAGCAAGTCAAATGC 66
||||||||||| || |||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 721 GCTGTAAGCAATAGACATACCTATATGTTTTCTGCTGGTGATGACAAGCAAGTCAAATGC 780
Query 67 TGGGACCTTGAGCAGAATAAGGTTATCCGATCTTATCATGGTCATTTGCATGGTGTCTAC 126
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 781 TGGGACCTTGAGCAGAATAAGGTTATTCGATCTTATCATGGTCATTTGCATGGCGTTTAC 840
Query 127 TGTTTAGCTCTTCATCAAACTGTAGACGTTTTACTAACCAGAGGGCGAGACTCTGTCTGC 186
|||||||||||||||| ||| | || ||| |||||||| ||||||||||||||||||||
Sbjct 841 TGTTTAGCTCTTCATCCTACTCTTGATGTTGTACTAACCGGAGGGCGAGACTCTGTCTGC 900
Query 187 AGGGTATGGGATATCCGTACGAAGATGAAAATTTTTGCGCTCTTGGGACATGACAAG-GA 245
||||||||||||||||||||||||||| ||||||||| ||| |||||||| | ||
Sbjct 901 AGGGTATGGGATATCCGTACGAAGATGCAAATTTTTGTACTCCC---ACATGACA-GCGA 956
Query 246 TGTCTGCTCCGTTGTCTCCCGTGCAACAGACCCACAAGTTATTACCGGATCTCATGATTC 305
||| | |||||| | |||| |||| || |||||||||||||| || |||||||| ||
Sbjct 957 TGTTTTTTCCGTTTTGGCCCGCCCAACTGATCCACAAGTTATTACAGGGTCTCATGACTC 1016
Query 306 AACCATTAGATTTTGGGACCTCCGATATAG-AA--CAATGACAAC-ACTAAC-ACATCTT 360
|||||| | ||||||||||||||||||| | || | ||| |||| | |||| | ||| |
Sbjct 1017 AACCATCAAATTTTGGGACCTCCGATATGGCAAATCGATGGCAACCA-TAACGA-ATCAT 1074
Query 361 AAGAA-AGCTGTCCGAGAAATGGCTCTCCATCTGAAA-A-A-TGCTTTCGTTTCTGCATT 416
||||| | ||||||||| |||||||||||||| |||| | | || ||| ||||||||||
Sbjct 1075 AAGAAGA-CTGTCCGAGCAATGGCTCTCCATCCGAAAGAGAATGATTTTGTTTCTGCATC 1133
Query 417 GGCTGACAATACCAAGAAATTTAGACTTTCTAAGGGAGAGTTTTGCCACAACATGCT 473
|||||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 1134 AGCTGACAACATCAAGAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCT 1190
> AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1
| chr4:9023728-9027666 FORWARD LENGTH=1731
Length=1731
Score = 464 bits (251), Expect = 3e-130
Identities = 406/479 (85%), Gaps = 18/479 (4%)
Strand=Plus/Plus
Query 7 GCTGTAAGCAA-CAGGCATACCTATATGTTCTCTTCTGGCGATGACAAGCAAGTCAAATG 65
||||||||||| | | |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 720 GCTGTAAGCAATC-GACATACCTATATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATG 778
Query 66 CTGGGACCTTGAGCAGAATAAGGTTATCCGATCTTATCATGGTCATTTGCA-TGGTGTCT 124
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 779 CTGGGACCTTGAGCAGAATAAGGTTATCCGATCTTATCATGGTCACTTG-AGTGGTGTCT 837
Query 125 ACTGTTTAGCTCTTCATCAAACTGTAGACGTTTTACTAACCAGAGGGCGAGACTCTGTCT 184
| || |||||||| || | |||| | || |||||| |||| | ||||||||||||||||
Sbjct 838 ATTGCTTAGCTCTGCACCCAACTTTGGATGTTTTATTAACTGGGGGGCGAGACTCTGTCT 897
Query 185 GCAGGGTATGGGATATCCGTACGAAGATGAAAATTTTTGCGCTCTTGGGACATGACAAGG 244
||||||| |||||||| ||||| |||||| |||||||||| |||| |||||||||||
Sbjct 898 GCAGGGTGTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAAC- 956
Query 245 AT-GTCTGCTCCGT-TGT-CTCCCGTGCAACAGACCCACAAGTTATTACCGGATCTCATG 301
| || || || || | | ||| || ||||||||||||||||| | |||||||| ||||
Sbjct 957 ACCGTTTGTTCTGTATTTACTC--GTCCAACAGACCCACAAGTTGTCACCGGATCCCATG 1014
Query 302 ATTCAACCATTAGATTTTGGGACCTCCGATATAGAA---CAATGACAACACTAACACATC 358
| | ||||||| |||||||||||| |||||| ||| ||||| |||| ||||||||||
Sbjct 1015 ACACGACCATTAAATTTTGGGACCTTCGATATGGAAAAACAATGTCAACGCTAACACATC 1074
Query 359 TTAAGAAAGCTGTCCGAGAAATGGCTCTCCATC-TGAA-A-AATGC-TTTCGTTTCTGCA 414
||||||| ||||||||| |||| | ||||||| | || | ||||| ||| | |||||||
Sbjct 1075 ATAAGAAATCTGTCCGAGCAATGACCCTCCATCCTAAAGAGAATGCCTTT-GCTTCTGCA 1133
Query 415 TTGGCTGACAATACCAAGAAATTTAGACTTTCTAAGGGAGAGTTTTGCCACAACATGCT 473
| |||||||| |||||||||||||| ||| | ||||||||||| ||||||||||||||
Sbjct 1134 TCAGCTGACAACACCAAGAAATTTAGCCTTCCAAAGGGAGAGTTCTGCCACAACATGCT 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22705834444
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5