BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896030

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45330.1 | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt...   366    5e-101
  AT5G23600.1 | Symbols:  | RNA 2'-phosphotransferase, Tpt1 / Kpt...   337    4e-92 


> AT2G45330.1 | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt1 
/ KptA family | chr2:18686336-18688035 FORWARD LENGTH=1035
Length=1035

 Score =  366 bits (198),  Expect = 5e-101
 Identities = 236/254 (93%), Gaps = 4/254 (2%)
 Strand=Plus/Plus

Query  2    CAAC-GTTTAGCCTCATAGATGAGAATGGAGAGCTCTTGATTCGCGCAAACCAAGGCCAC  60
            |||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| 
Sbjct  446  CAACGGTTTAGTCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCTAACCAAGGCCA-  504

Query  61   TT-GATCACGGCGGTTGAGTCAGAGAAGTTACTTAAACCAATCCTGTCACCAGAAGAAGC  119
            || ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  505  TTCGATCACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATACTGTCACCAGAAGAAGC  564

Query  120  TCCAGTGTGTGTGCATGGAACTTATAAGAAGAATTTGGAATCCATCTTATCATCGGGCTT  179
            |||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct  565  TCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTAGCATCGGGCTT  624

Query  180  AAAGCGCATGAATAGACTGCATATTCACTTCTCTTGTGGCTTGCCAACAGATGGTGAAGT  239
            |||||| ||||||||| ||||| |||||||||||||||| || |||||||||||||||||
Sbjct  625  AAAGCGTATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACAGATGGTGAAGT  684

Query  240  GATTAA-GGCATGA  252
            |||||  |||||||
Sbjct  685  GATTAGTGGCATGA  698


> AT5G23600.1 | Symbols:  | RNA 2'-phosphotransferase, Tpt1 / KptA 
family | chr5:7955994-7956632 FORWARD LENGTH=639
Length=639

 Score =  337 bits (182),  Expect = 4e-92
 Identities = 223/243 (92%), Gaps = 1/243 (0%)
 Strand=Plus/Plus

Query  3    AAC-GTTTAGCCTCATAGATGAGAATGGAGAGCTCTTGATTCGCGCAAACCAAGGCCACT  61
            ||| |||||||||||| |||||| |||||||||||||||||||||| || ||||||||||
Sbjct  212  AACGGTTTAGCCTCATCGATGAGGATGGAGAGCTCTTGATTCGCGCTAATCAAGGCCACT  271

Query  62   TGATCACGGCGGTTGAGTCAGAGAAGTTACTTAAACCAATCCTGTCACCAGAAGAAGCTC  121
              |||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct  272  CAATCACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATATTGTCACCAGAAGAAGCTC  331

Query  122  CAGTGTGTGTGCATGGAACTTATAAGAAGAATTTGGAATCCATCTTATCATCGGGCTTAA  181
            |||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||
Sbjct  332  CAGTGTGTGTACATGGAACTTATAGGAAGAATTTAGAATCCATCTTAGCATCGGGCTTAA  391

Query  182  AGCGCATGAATAGACTGCATATTCACTTCTCTTGTGGCTTGCCAACAGATGGTGAAGTGA  241
            |||| ||||||||| ||||| |||||||||||||||| || || ||||||||||||||||
Sbjct  392  AGCGTATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCTACAGATGGTGAAGTGA  451

Query  242  TTA  244
            |||
Sbjct  452  TTA  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11461046772


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5