BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896040

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01090.1 | Symbols:  | Ubiquinol-cytochrome C reductase hing...   291    2e-78
  AT1G15120.2 | Symbols:  | Ubiquinol-cytochrome C reductase hing...   219    1e-56


> AT2G01090.1 | Symbols:  | Ubiquinol-cytochrome C reductase hinge 
protein | chr2:79989-81200 FORWARD LENGTH=537
Length=537

 Score =  291 bits (157),  Expect = 2e-78
 Identities = 169/175 (97%), Gaps = 0/175 (0%)
 Strand=Plus/Plus

Query  5    CAGAAGAAGAAGCTGTTGATCAGAAAAGATACTTTGAGGAATCTTGCAAACCAAAATGTG  64
            |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  110  CAGAAGAAGATGTTGTTGATCAGAAAAGATACTTTGAGGAATCTTGCAAACCAAAATGTG  169

Query  65   TGAAGCCACTTCTTGAATATCAGGCGTGTGTCAAGAGAATTCAAGATGATGAGTCTGGCC  124
            |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  170  TGAAGCCACTACTTGAATATCAGGCGTGTGTCAAGAGGATCCAAGATGATGAGTCTGGCC  229

Query  125  ACAAACATTGCACTGGGCAGTATTTTGATTACTGGCATTGTGTTGACAAATGTGT  179
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  230  ACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGT  284


> AT1G15120.2 | Symbols:  | Ubiquinol-cytochrome C reductase hinge 
protein | chr1:5202648-5204193 FORWARD LENGTH=744
Length=744

 Score =  219 bits (118),  Expect = 1e-56
 Identities = 158/177 (89%), Gaps = 4/177 (2%)
 Strand=Plus/Plus

Query  3    GGCAGAAGAAGAAGCTGTTGAT-CAGAA-AAGATACTTTGAGGAATCTTGCAAACCAAAA  60
            |||||| || |||| ||||||| || || ||| ||| |||||||||||||||||||||||
Sbjct  204  GGCAGATGATGAAGTTGTTGATCCA-AAGAAG-TACCTTGAGGAATCTTGCAAACCAAAA  261

Query  61   TGTGTGAAGCCACTTCTTGAATATCAGGCGTGTGTCAAGAGAATTCAAGATGATGAGTCT  120
            ||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||| |||
Sbjct  262  TGTGTGAAGCCACTTCTCGAATATCAGGCATGTGTCAAGAGAATCCAAGGTGATGATTCT  321

Query  121  GGCCACAAACATTGCACTGGGCAGTATTTTGATTACTGGCATTGTGTTGACAAATGT  177
            |||||||| ||||||||||| ||||||||||| |||||||| ||  |||||||||||
Sbjct  322  GGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5