BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896073
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01450.1 | Symbols: ATMPK17, MPK17 | MAP kinase 17 | chr2:19... 2396 0.0
> AT2G01450.1 | Symbols: ATMPK17, MPK17 | MAP kinase 17 | chr2:199512-202306
REVERSE LENGTH=1766
Length=1766
Score = 2396 bits (1297), Expect = 0.0
Identities = 1408/1462 (96%), Gaps = 5/1462 (0%)
Strand=Plus/Plus
Query 1 ATGTTGGAGAAAGAGTTTTTCACGGAGTATGGTGAAGCAAGTCAATATCAGATCCAAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 ATGTTGGAGAAAGAGTTTTTCACGGAGTATGGTGAAGCAAGTCAATATCAGATCCAAGAA 155
Query 61 GTTGTTGGCAAAGGAAGCTATGGCGTTGTTGCTTCTGCGGAATGTCCACACACGGGAGGC 120
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 156 GTTGTTGGCAAAGGAAGCTACGGAGTTGTTGCTTCTGCGGAATGTCCACACACGGGAGGC 215
Query 121 AAAGTGGCGATCAAGAAGATGACCAATGTGTTTGAACATGTTTCAGACGCTATTCGTATC 180
||||| || |||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 216 AAAGTAGCCATCAAGAAGATGACAAATGTGTTTGAACATGTCTCAGATGCTATTCGTATC 275
Query 181 CTCAGAGAGATCAAGCTTCTCAGGCTTCTTCGACATCCTGATATCGTGGAGATCAAGCAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CTCAGAGAGATCAAGCTTCTCAGGCTTCTTCGACATCCTGATATCGTGGAGATCAAGCAT 335
Query 241 ATCATGCTCCCTCCTTGTCGCAAAGAGTTCAAAGATATATATGTTGTTTTTGAGTTGATG 300
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 336 ATCATGCTTCCTCCTTGTCGCAAGGAATTCAAAGATATATATGTTGTTTTTGAGTTGATG 395
Query 301 GAGTCTGATCTTCACCACGTTCTTAAGGTAAATGACGACCTCACTCCTCAGCATCATCAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GAGTCTGATCTTCACCACGTTCTTAAGGTAAATGACGACCTCACTCCTCAGCATCATCAA 455
Query 361 TTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAGCTCATGTCTTCCAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 456 TTCTTCTTGTACCAACTTCTTCGTGGCTTAAAATTCATGCACTCAGCTCATGTGTTCCAT 515
Query 421 CGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTGATTGCAAGATCAAGATCTGTGAT 480
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 516 AGAGATCTGAAGCCTAAGAACATCCTCGCTAATGCTGATTGCAAAATCAAGATCTGTGAT 575
Query 481 TTAGGACTTGCTCGTGTCTCCTTCACTGATTCCCCTTCTGCCGT-TTTCTGGACTGACTA 539
||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||
Sbjct 576 TTAGGACTTGCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTT-TGGACTGACTA 634
Query 540 CGTTGCTACTAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCTATTCTAATTACAC 599
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 635 CGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCTATTCTAACTACAC 694
Query 600 GCCAGCGATTGACATGTGGAGCGTTGGCTGCATATTTGCAGAGATGCTAATTGGAAAACC 659
||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||
Sbjct 695 GCCGGCGATTGACATGTGGAGTGTTGGGTGCATATTTGCAGAGATGCTAACTGGAAAACC 754
Query 660 TTTGTTTCCTGGCAAAAACGTTGTGCACCAGCTTGAACTCGTCACTGATTTGCTTGGAAC 719
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 755 TTTGTTTCCTGGCAAAAACGTTGTGCACCAGCTAGAACTCGTGACTGATCTGCTTGGAAC 814
Query 720 TCCGTCGCCGATAACTCTATCCAGGATTCGCAATGAGAAGGCTAGAAAGTATTTGGGTAA 779
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 815 TCCGTCGCCGATAACTCTATCCAGGATTCGGAATGAGAAGGCTAGAAAGTATTTGGGAAA 874
Query 780 CATGAGGCGAAAGGATCCTGTACCTTTCACCCATAAATTCCCCAATATCGATCCTGTGGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CATGAGGCGAAAGGATCCTGTACCTTTCACCCATAAATTCCCCAATATCGATCCTGTGGC 934
Query 840 GCTGAAGTTACTTCAGCGTTTGATCGCTTTTGACCCAAAGGACCGTCCCTCTGCAGAAGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GCTGAAGTTACTTCAGCGTTTGATCGCTTTTGACCCAAAGGACCGTCCCTCTGCAGAAGA 994
Query 900 GGCATTGGCTGATCCGTATTTTCAAGGATTGGCAAATGTTGACTATGAACCATCGAGGCA 959
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 995 GGCATTGGCTGATCCGTATTTTCAAGGATTGGCAAATGTGGACTATGAACCATCGAGGCA 1054
Query 960 ACCTATCTCGAAACTCGAGTTTGAGTTTGAGAGGAGGAAATTGACTCGGGATGATGTGAG 1019
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1055 ACCTATCTCGAAACTTGAGTTTGAGTTTGAGAGGAGGAAATTGACTCGCGATGACGTGAG 1114
Query 1020 GGAACTCATGTACAGAGAGATTTTGGAGTATCATCCACAGATGCTGCAAGAGTATCTACA 1079
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1115 GGAACTCATGTACAGAGAGATTTTGGAGTATCATCCACAGATGTTGCAAGAGTATCTACA 1174
Query 1080 AGGAGAAGAGAACATCAACTCTCATTTTCTATACCCGAGCGGAGTTGATCAGTTCAAACA 1139
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1175 AGGAGAAGAGAACATAAACTCTCATTTTCTATACCCAAGCGGAGTTGATCAGTTCAAACA 1234
Query 1140 AGAGTTTGCCCGACTCGAAGAACACAACGACGATGAAGATGAACACAACTCCCCACCACA 1199
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1235 AGAGTTTGCCCGACTCGAAGAACACAACGACGATGAAGAGGAACACAACTCCCCACCACA 1294
Query 1200 TCAGAGAAAGTACACTTCACTTCCTAGAGAACGGGTGTGCTCATCAGAGGATGAAGGTTC 1259
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1295 TCAGAGAAAGTACACTTCACTCCCTAGAGAACGGGTGTGCTCATCAGAAGACGAAGGTTC 1354
Query 1260 TGATTCAGTTCACGC--A-TCGTCTTCAGCGTCAGTGGTGTTTACACCTCCACAGACTCC 1316
|||||||||||| || | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1355 TGATTCAGTTCATGCTCAATCGTCTTCAGCTTCAGTGGTGTTTACACCTCCACAGACTCC 1414
Query 1317 AAACACAGCAACTGGCCTATCGTCACAGAAGACAACACAGGTAGACAAAGCAGCAACTCC 1376
|||||||||||||||| |||| ||||||||| | |||| ||||||||||||||||||||
Sbjct 1415 AAACACAGCAACTGGCTTATCATCACAGAAGGCGTCACAAGTAGACAAAGCAGCAACTCC 1474
Query 1377 GGTAAAACGGTCTGCATGTCTAATGAGGAGTGATAGTATCTGTGCATCAAGATGTGTCGG 1436
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1475 GGTAAAACGGTCTGCATGTCTAATGAGGAGTGATAGTATCTGTGCTTCAAGATGTGTTGG 1534
Query 1437 TGTCTCATCTGCAGTGTCTTAG 1458
|||||| ||||||||||| |||
Sbjct 1535 TGTCTCCTCTGCAGTGTCATAG 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5