BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896089
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 520 2e-146
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 520 bits (281), Expect = 2e-146
Identities = 754/969 (78%), Gaps = 86/969 (9%)
Strand=Plus/Plus
Query 612 ATCTGAGGTGTCAATATTTGTTACATTAGCAATGCT-TGTGCGTAGCG-ATCCTCTTGTC 669
|||| ||||| ||||||||||| ||||||| ||| | | ||||||| | | ||| || |
Sbjct 890 ATCTCAGGTGGCAATATTTGTTGCATTAGCGATGGTAT-TGCGTAG-GAAGCCTGATG-C 946
Query 670 -TTGACTAGGGTTA-TGCCCTCTCTG-TGGATCAAGCGTTATTTTCATGGACCTGG-CCG 725
||||||| | || |||| ||||| ||| || | | | | ||| || | ||
Sbjct 947 TTTGACTAATG-TATTGCCAACTCTGAGGGA-GAATCCTAAGTATCA-GGGTCAGGATAA 1003
Query 726 GATTCCGCTTACAATTTGGTTGGTAGATCAGGCCTCCCAAGATAATTTACCTGTAGGCTT 785
| ||||| ||||| ||||| || | | |||||||||||||| | || || ||||||||||
Sbjct 1004 GCTTCCGGTTACAGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATATAGCTGTAGGCTT 1063
Query 786 GTATTCATGGG-TGCATAGCTTGTTACCACTAGTC---CCT-AGAA-T-T---CCTGAGT 835
||||||||||| | || | ||||||||| | ||| | |||| | | ||| |||
Sbjct 1064 GTATTCATGGGCT-CACAACTTGTTACCTGTTGTCGGTAATAAGAACTGTAACCCTCAGT 1122
Query 836 CAACGGATCCCATCCTAAAGTTGGTTGAGAAAATTCTGGCGAAACCAGACGCTCAAACCA 895
||| ||||| |||||| ||||||||||||||||| || |||| ||| | |||| ||||
Sbjct 1123 CAAGGGATCTCATCCTGCAGTTGGTTGAGAAAATTTTGACGAATCCAAAGGCTCGTACCA 1182
Query 896 TACTTGTAAATGCTCCTGTTTGGGATGGAAG-GCGACTGATTCCACCTCATAT-ATTTGA 953
|||||||||||| ||| || ||| || || ||| |||||||||||| | | ||||||
Sbjct 1183 TACTTGTAAATGGAGCTG-TTAGGAAGGGAGAGCGTTTGATTCCACCTCCT-TCATTTGA 1240
Query 954 GGCCTTGCTGTGGCTTACATTCCCTGTCA-CATCCGAAAGAG-AAGAGGCTACA-AGTAG 1010
| |||| || ||||||||||||||| || |||| | ||||| || |||||||| || ||
Sbjct 1241 GATCTTGTTGCGGCTTACATTCCCTG-CATCATCTGCAAGAGTAA-AGGCTACAGAG-AG 1297
Query 1011 GTTTGAGGCAATTTATCCCTTG-TTAAAGGAAGTGGCTCTTGCCAGTACATCAGG-A--A 1066
|||||||||||| ||||||||| | ||| |||||||||||||| || || |||| | |
Sbjct 1298 GTTTGAGGCAATATATCCCTTGCTGAAA-GAAGTGGCTCTTGCTGGTGCACCAGGAAGCA 1356
Query 1067 A--CGA-G--GCAA-T-A-A-AACAGATATTCACTTTTTCTTTGAAATTATCTGGAGAAG 1117
| ||| | ||| | | | ||||||||||||||||| || |||||||| || | |
Sbjct 1357 AGGCGATGAAACAAGTCACACAACAGATATTCACTTTTGCTCTGAAATTAGCT---G--G 1411
Query 1118 AAGTTACAGGAAATCCTGTTTTAGCCAAGGAAGCTACATCAATCGCAATCTGGTCTCTGA 1177
|| | ||||||||||||||||||||||||||||||| |||| || ||||||||| |||
Sbjct 1412 -AG--A-AGGAAATCCTGTTTTAGCCAAGGAAGCTACAGCAATTGCTATCTGGTCTGTGA 1467
Query 1178 CCGAAAACATTAATTGCTGGAAGCACTGGGACAATGTCTATAAGGAGAATCTAGGA-GTT 1236
|| ||||| || ||||||| ||||||||||||||| |||| ||||||||||| ||| | |
Sbjct 1468 CCCAAAACTTTGATTGCTGCAAGCACTGGGACAATCTCTACAAGGAGAATCT-GGAAGCT 1526
Query 1237 AGTGTTGCTCTTCTTAAAAAGCTTGTAGACGAGTGGAACGATCATTCCCTCAAATTATTA 1296
||||||||| |||||||||||||||| || || ||||| || ||||| ||||| ||| |
Sbjct 1527 AGTGTTGCTGTTCTTAAAAAGCTTGTTGAAGAATGGAAAGAGCATTCGGTCAAACTATCA 1586
Query 1297 TCACCACCGAGTGATACTCTCACTCTTAGTCAAACTATGAAGAGCTTCATGCTAAAGAAC 1356
||| |||||| |||| |||||||||| | | ||||||||| ||||||| ||||||||||
Sbjct 1587 TCATCACCGAATGATGCTCTCACTCTCAACCGAACTATGAAAAGCTTCAGGCTAAAGAAC 1646
Query 1357 AAAAAAGCCATCACTGAGG------C---T--T-CTCTTTACAAAGAAGCTGACGAGTCC 1404
| | | ||||||||||| | | | |||||||||||||||||||| ||||
Sbjct 1647 GAGGAGGTCATCACTGAGGGAGGAGCCAATGCTTCTCTTTACAAAGAAGCTGACAAGTCT 1706
Query 1405 TGCAAAGTGATATCTGGGAGACTC-CCTCGTGGAAG-GAGCAGCCTCAAAGGTACAACCA 1462
|||||| ||| || ||||||||| || |||||||| | || |||||||||| ||| |||
Sbjct 1707 TGCAAAACGATCTCGGGGAGACTCTCC-CGTGGAAGTG-GCTGCCTCAAAGGAACAGCCA 1764
Query 1463 TTACTGCT-GTTGTT-CTAGTTGCTACTGTGGTTCTAGCCGCTGTTGCA-CATGTTCTAT 1519
||||| | || ||| |||| |||| | | | |||||||| |||| | ||||||||
Sbjct 1765 TTACTT-TAGT-GTTTCTAGCTGCTGCAG-G-----AGCCGCTGCTGCAGC-TGTTCTAT 1815
Query 1520 CTTCCAACC 1528
|||||||||
Sbjct 1816 CTTCCAACC 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5