BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896096
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 839 0.0
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 839 bits (454), Expect = 0.0
Identities = 522/555 (94%), Gaps = 3/555 (1%)
Strand=Plus/Plus
Query 421 AAGATCATCAGCAAACTGAGACATCGAAACATGGTGCAACTCATTGGTTGGTGTAATGaa 480
|||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct 1189 AAGATCATCAGCAAACTGAGACATCGAAACCTCGTGCAGCTCATCGGTTGGTGTAATGAG 1248
Query 481 aaaaaCGAGTTCTTGCTGATATATGAGTTAGTGCTAAATGGTAGCTTGAACTCCCACCTC 540
||||| |||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 1249 AAAAATGAGTTCTTGCTGATATATGAGTTAGTTCCAAATGGTAGCTTGAACTCTCACCTC 1308
Query 541 TTTGGCAAAAGACCCCATTTACTTTCTTGGGACATAAGGTACAAGATAGCTCTTGGTTTA 600
||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1309 TTTGGGAAAAGACCCAATTTACTTTCTTGGGACATAAGGTACAAGATAGGTCTTGGTTTA 1368
Query 601 GCCTCTGCTCTGCTTTATCTTCATGAAGAATGGGATCAATGTGTACTGCACAGAGACATC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GCCTCTGCTCTGCTTTATCTTCATGAAGAATGGGATCAATGTGTACTGCACAGAGACATC 1428
Query 661 AAAGCAAGCAATATAATGCTTGACAGTGATTTCAATGTAAAGTTAGGTGATTTCGGTTTG 720
|| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1429 AAGGCAAGTAATATAATGCTTGACAGTGAATTCAATGTAAAGTTAGGTGATTTCGGGTTG 1488
Query 721 GCTCGGGTTATGAACCATGAACATGGTTCCCATACAACAGGATTGGCTGGAACTTTTGGG 780
|||||| | ||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 1489 GCTCGGCTAATGAACCATGAACTTGGTTCCCATACAACGGGGTTGGCTGGAACTTTTGGG 1548
Query 781 TACATGGCACATGAATATGTAACGAAAGGAAGTGCGAGTAAAGAGTCTGATATATATAGC 840
|||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1549 TACATGGCACCTGAATATGTAATGAAAGGAAGTGCGAGTAAAGAATCTGATATATATAGC 1608
Query 841 TTTGGAATTGTTTTACTAGAGATTGTCACAGGGAGAAAATCGCTGGAACGAACGCAAGAA 900
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1609 TTTGGAATTGTTTTACTAGAGATTGTCACAGGGAGAAAATCGCTGGAACGTACACAAGAA 1668
Query 901 GATAACAGTGATTCAGAGAGT-A--ATGAGAAGAGTCTTGTGGAGAAAGTTTGGAAACTT 957
|||||||||||| |||||||| | ||||||||||||| ||||||||||||||| | |||
Sbjct 1669 GATAACAGTGATACAGAGAGTGATGATGAGAAGAGTCTAGTGGAGAAAGTTTGGGAGCTT 1728
Query 958 TATGGAAAACAAGAA 972
|||||||||||||||
Sbjct 1729 TATGGAAAACAAGAA 1743
Score = 424 bits (229), Expect = 1e-117
Identities = 309/346 (89%), Gaps = 11/346 (3%)
Strand=Plus/Plus
Query 1 GAGTTCAAGCCTTTCTTACATCATCGACCTCGC-AA------ACCATCAGAAGTAATGTT 53
||||||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 687 GAGTTCAAGCCTTTCTTACATCATCGACCTCGCTAAGGTTCTGCCATCAGATGTTATGTT 746
Query 54 CGGGTTTATAGCTGCTGCTGGAAGAAACACAGAGGAACATAGACTTTTATCATGGGAGCT 113
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 747 CGGGTTTATAGCTGCCGCTGGGACAAACACAGAGGAACATAGACTTTTATCATGGGAGCT 806
Query 114 CAGTTCAACTTTGGATATCGAGAAAGCCGATAGCAAGATAGGATTGGTCGTTGGCATTTC 173
|||||||| |||||| | ||| ||||||||||||| ||||||| | || ||||||||||
Sbjct 807 CAGTTCAAGTTTGGACAGCGACAAAGCCGATAGCAGGATAGGACTAGTAATTGGCATTTC 866
Query 174 GGTTTCCGGGTTTGTTTTACTGATAGTTT-TGGTCCA-CACGATCGTGGTGGTTTGGTCA 231
|| ||||||||||||||| |||| |||| ||||| | ||| | ||||||||||||||||
Sbjct 867 GGCTTCCGGGTTTGTTTTTCTGAC-GTTTATGGTC-ATCACAACCGTGGTGGTTTGGTCA 924
Query 232 CGGAAGCAAAGAAAAAAGAAAGACAGAGATATAGCAAACATGATATCGATAAACGAAGAT 291
|||||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct 925 CGGAAGCAAAGAAAGAAGAAAGAAAGAGATATAGAAAACATGATATCGATAAACAAAGAC 984
Query 292 CTTGAAAGGGAAGCAGGACCAAGAAAGTTTTCTTATAAAGATCTTG 337
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 985 CTTGAAAGGGAAGCAGGACCAAGAAAGTTTTCTTATAAGGATCTTG 1030
Score = 137 bits (74), Expect = 2e-31
Identities = 80/83 (96%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 338 AGCTAGGTGAAGGAGGATTTGGAGCGGTTTATGAAGGAAATTTGAAAGAAATCAATACAA 397
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1064 AGCTAGGTGAAGGAGGATTTGGAGCAGTTTATGAAGGAAACTTGAAAGAAATCAATACAA 1123
Query 398 TGGTTGCGGTGAAGAAATTATCC 420
||||||||||||||||| |||||
Sbjct 1124 TGGTTGCGGTGAAGAAACTATCC 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5