BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896115

Length=810
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36530.1 | Symbols: LOS2, ENO2 | Enolase | chr2:15320756-153...   411    7e-114


> AT2G36530.1 | Symbols: LOS2, ENO2 | Enolase | chr2:15320756-15323869 
REVERSE LENGTH=1743
Length=1743

 Score =  411 bits (222),  Expect = 7e-114
 Identities = 349/410 (85%), Gaps = 10/410 (2%)
 Strand=Plus/Plus

Query  226   TTTGCACCAAACATTCAGGAGAACAAAGAAGGTCTAGAACTGCTTAAGACTGCCATTGAG  285
             |||||||||||||||||||||||||| || ||||| ||| |||| |||||||| || |||
Sbjct  735   TTTGCACCAAACATTCAGGAGAACAAGGAGGGTCTTGAATTGCTCAAGACTGCTATCGAG  794

Query  286   AAGGCCGGATACACTTGCAAGGTTGTCATTGGAATGGATGTCGCTGCGTCTGAGTTCTAC  345
             ||||| ||||||||| | ||||||||||||||||||||||| || || || |||||||||
Sbjct  795   AAGGCTGGATACACTGGAAAGGTTGTCATTGGAATGGATGTTGCCGCTTCAGAGTTCTAC  854

Query  346   TCATCAGACAAGAAATACGACTTGAACTTCAAAGAAGAGAACAACGATGGTTCTCAAAAG  405
             |||  ||||||||  |||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct  855   TCAGAAGACAAGACCTACGACTTGAACTTCAAAGAAGAGAACAACAATGGCTCTCAGAAG  914

Query  406   ATCTCTGGAGATGCTCTCAAGGACTTGTACAAGTCATTTGTTTCAGAGTACCCTAAT-GT  464
             || ||||| |||||||| |||||| |||||||||| |||||  | |||||||| ||| ||
Sbjct  915   ATTTCTGGTGATGCTCTAAAGGACCTGTACAAGTCCTTTGTCGCTGAGTACCC-AATCGT  973

Query  465   ATCCATTGAAGACCCATTTGACCAAGATGACTGGGAGAACTATGTTGAA-ATGACCGTTG  523
              |||||||| ||||||||||||||||||||||||||| |||||| | || ||||||  ||
Sbjct  974   GTCCATTGAGGACCCATTTGACCAAGATGACTGGGAGCACTATGCT-AAGATGACCACTG  1032

Query  524   AATGTGGCGAGAAAG-TTCAAATCGTCGGTGATGATTTGCTGGTCACCAACCCCAAGAAA  582
             | |||||  |   || |||| || ||||||||||||||| ||||||| |||||||||| |
Sbjct  1033  AGTGTGGA-ACCGAGGTTCAGATTGTCGGTGATGATTTGTTGGTCACTAACCCCAAGAGA  1091

Query  583   GTTAAGAAGGCAATCA-ATGA-AAGGTCTTGCAATGCTGTTCTATTGAAG  630
             |||   |||||||||  | || ||| |||||||||||| |||| ||||||
Sbjct  1092  GTTGCTAAGGCAATCGCA-GAGAAG-TCTTGCAATGCTCTTCTTTTGAAG  1139



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39433805395


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5