BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896116 Length=564 Score E Sequences producing significant alignments: (Bits) Value AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex... 904 0.0 > AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex subunit 8 | chr3:17779653-17782645 REVERSE LENGTH=1967 Length=1967 Score = 904 bits (489), Expect = 0.0 Identities = 541/565 (96%), Gaps = 7/565 (1%) Strand=Plus/Plus Query 1 GCTCAGTATTGTCTTAGGGAATTTGACCACGTTGAAATCATGTTTAG-AGAACATT-TGA 58 ||||||||| ||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 918 GCTCAGTATAGTCTTAGGGAATTCGACCAGGTTGAAATCATGTTT-GAAGAAC-TTCTGA 975 Query 59 GAAACGATCCCTATCGGATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAG 118 |||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||| Sbjct 976 GAAACGATCCATATCGGGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAG 1035 Query 119 AAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGAC 178 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1036 AAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGAC 1095 Query 179 CTGAGTCTTGCTGCATCATTAGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAGCAG 238 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 1096 CTGAGTCTTGCTGCATCATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAG 1155 Query 239 TTATGTACTTCCGGAGAGCTTTGAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTA 295 ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1156 TTATGTATTTCCGGAGAGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTA 1215 Query 296 TGGGCCATGAATATGTTGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAG 355 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1216 TGGGCCATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAG 1275 Query 356 CTGTTGATATAAACCCTTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGA 415 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1276 CTGTTGATATAAACCCTACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGA 1335 Query 416 TGATGGGGATGCCTTTCTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAA 475 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1336 TGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAA 1395 Query 476 ACGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGC 535 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1396 ATGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGC 1455 Query 536 TTGAAGAGGCCATCAAGTGTTACAA 560 ||||||||||||||||||||||||| Sbjct 1456 TTGAAGAGGCCATCAAGTGTTACAA 1480 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27076205233 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5