BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896116
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex... 904 0.0
> AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex
subunit 8 | chr3:17779653-17782645 REVERSE LENGTH=1967
Length=1967
Score = 904 bits (489), Expect = 0.0
Identities = 541/565 (96%), Gaps = 7/565 (1%)
Strand=Plus/Plus
Query 1 GCTCAGTATTGTCTTAGGGAATTTGACCACGTTGAAATCATGTTTAG-AGAACATT-TGA 58
||||||||| ||||||||||||| ||||| ||||||||||||||| | ||||| || |||
Sbjct 918 GCTCAGTATAGTCTTAGGGAATTCGACCAGGTTGAAATCATGTTT-GAAGAAC-TTCTGA 975
Query 59 GAAACGATCCCTATCGGATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAG 118
|||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 976 GAAACGATCCATATCGGGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAG 1035
Query 119 AAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGAC 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1036 AAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGAC 1095
Query 179 CTGAGTCTTGCTGCATCATTAGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAGCAG 238
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1096 CTGAGTCTTGCTGCATCATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAG 1155
Query 239 TTATGTACTTCCGGAGAGCTTTGAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTA 295
||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1156 TTATGTATTTCCGGAGAGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTA 1215
Query 296 TGGGCCATGAATATGTTGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAG 355
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1216 TGGGCCATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAG 1275
Query 356 CTGTTGATATAAACCCTTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGA 415
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 CTGTTGATATAAACCCTACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGA 1335
Query 416 TGATGGGGATGCCTTTCTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAA 475
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1336 TGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAA 1395
Query 476 ACGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGC 535
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 ATGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGC 1455
Query 536 TTGAAGAGGCCATCAAGTGTTACAA 560
|||||||||||||||||||||||||
Sbjct 1456 TTGAAGAGGCCATCAAGTGTTACAA 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5