BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896117
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex... 326 9e-89
> AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex
subunit 8 | chr3:17779653-17782645 REVERSE LENGTH=1967
Length=1967
Score = 326 bits (176), Expect = 9e-89
Identities = 218/237 (92%), Gaps = 8/237 (3%)
Strand=Plus/Plus
Query 1 ACTGTACTGACACAAAAGGAATATCACTT-A--A--T--C-AAGCTTCACCAGAAGCTTG 52
||||||||||||| |||||||| ||||| | | | | |||||||||||||||||||
Sbjct 1492 ACTGTACTGACACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTG 1551
Query 53 GACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAG 112
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1552 GACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAG 1611
Query 113 GATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTTGCCACACATTTTAAAACTC 172
||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||
Sbjct 1612 GATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTTGCCACACATTTTAAAAATC 1671
Query 173 ACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGAC 229
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 ACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGAC 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12969079242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5