BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896141
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01960.1 | Symbols: TET14 | tetraspanin14 | chr2:450379-4519... 1064 0.0
> AT2G01960.1 | Symbols: TET14 | tetraspanin14 | chr2:450379-451910
FORWARD LENGTH=905
Length=905
Score = 1064 bits (576), Expect = 0.0
Identities = 714/779 (92%), Gaps = 16/779 (2%)
Strand=Plus/Plus
Query 10 CAAAGCCAAAAGTCATGGAATCTAGTCGCCGGAATCTTCTTTCCGATCATCACTTTCATT 69
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 24 CAAAGCCATAAGCCATGGAATCTAGTCGCCGGAATCTTCTTTCCGATCATCACTTTC-TT 82
Query 70 -CTCTCAGCTCCTCTCGTCGGCCACGCCTTGTATCTCTTCTGCATGCGTAACGACCACGT 128
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 CCTCTCGGCTCCTCTTGTCGGCCACGCCTTGTATCTCTTCTGCATGCGTAACGACCACGT 142
Query 129 TTTCTACCGAAGCAGCTTCCAAAGTATG-T--CACGTGTACAGACACTCGTCAGCGTCTC 185
|| |||||| | | ||||||||||| | | |||||||||| |||||||||||||||||
Sbjct 143 TTACTACCG-CG-A-CTTCCAAAGTACGTTACCACGTGTACAAACACTCGTCAGCGTCTC 199
Query 186 TCTCCTCGCCTTGTTCCTCCTTAGCAACATCGCTATGTTTCTCCGACCACGACGGCTTAG 245
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 200 TCTCCTCGCCTTGTTCCTCCTTAGCAACATCGGTATGTTTCTCCGACCACGACGGCTCAG 259
Query 246 CTACTTTCTAGTTATTGTCTTCTTCGTCGGCTTTGCTTACGCCGGTGTGTACAAGATGGA 305
|||||| |||||||||||||||||| | || ||||||||| |||||||||||||||||||
Sbjct 260 CTACTTCCTAGTTATTGTCTTCTTCATAGGTTTTGCTTACTCCGGTGTGTACAAGATGGA 319
Query 306 AAGCCGGCGGTTTCCTCCGACTCCAATATGGTTCAAGGGAGAATATAGGAATGGACAACG 365
||||||||||||| ||||||| ||||| || |||||||||||||||| ||||||||| |
Sbjct 320 AAGCCGGCGGTTTTCTCCGACACCAATGTGTTTCAAGGGAGAATATAATAATGGACAAGG 379
Query 366 TAG---GT----CAGAAGAATATCAAGTGGTTAAGATTGAACAAAGTCAAGGACGCTTGC 418
|| || ||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 380 -AGAACGTAAAACAGAACAATATCAAGTGGTTAAGATAGAACAAAGTCAAGGACGCTTGC 438
Query 419 AAAGAGTTCACTTGCGGTTTGTCGACAGCTATGACTTGCCACCGTATGATAGAAGATTGT 478
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 439 AAAGAGTTCACTTGCGGTTTGTCAACAGCTATGCCTTGCCACCGTATGATAGAAGATTGT 498
Query 479 TACCATCCGTTAAGACTGGATGCTGCAGTCGGCCAGGGAGTTGCAAGCTAGAGACGGTCA 538
||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 499 TACCATCTGTTAAGACTGGATGCTGCAATCGGCCAGGGAATTGCAAACTAGAGACGGTCA 558
Query 539 ACGCATCATTGTGGGTTACAAGAAATCGTCAAAGACCACCGTTAGAAACGGCAATGATCT 598
| ||| ||||||||||||||||||||||| || ||||||| || ||||||||||||||||
Sbjct 559 ATGCAACATTGTGGGTTACAAGAAATCGTGAAGGACCACCTTTGGAAACGGCAATGATCT 618
Query 599 ACGGTCGTTACAGTGGCAATGCAGACATAAGGGATTATTACGACATGTGGAGACACGAGT 658
| | ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 619 ATGATCGTTACGGTGGCAATGCAGACATAAAGGATTATTACGATATGTGGAGACACGAGT 678
Query 659 TGAGTGTGTTGTACTATGATTGCATGACTTGTCAGGTCAGGATCATTAAGTCTCCACGGC 718
| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 679 TAAGTGTGTTGTACTATGATTGTATGACTTGTCAGGTTAGGATCATTAAGTCTCCAAGGC 738
Query 719 TGCGCAAATGGTGGCACTTCGGTGTTTTCTTGTCATCCCTCACTTCTTTGTTTAGATAG 777
|||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||
Sbjct 739 TGCGCAAATGGTGGCAGTTCGGTGTTTTCTTATCTTCCCTCACCTCTTTGTTTAGATAG 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5