BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896143 Length=678 Score E Sequences producing significant alignments: (Bits) Value AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 313 2e-84 > AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1, blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611 OSJNBb0043H09.1 {Oryza sativa (japonica cultivar-group)} | chr3:11627225-11630679 FORWARD LENGTH=3455 Length=3455 Score = 313 bits (169), Expect = 2e-84 Identities = 216/239 (90%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 1 ATGAATAATTACCGTTTAAAAGATCCTACACCCCTTGGTAAAGAGTTTTTGGTTGACAAT 60 |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||| || Sbjct 238 ATGAATAACTACCATTTAAAAGACCCTATACCCCTTGGTAAAGAGTTTTTGGTTGAAAAA 297 Query 61 TTTAACGAGAAGTTCAATCTCAATATAAACTATCGGTTCTTTAAAGAAAAGCTTGATCAG 120 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | ||| Sbjct 298 TTTAATGAGAAGTTCAATCTCAATATAAACTATCGGTTCTTCAAAGAAAAGCTTAACCAG 357 Query 121 TT-AAAAAAGAAGTACAAAAAGTATGTACAGCTCATGAATAACACAGGCATCACGGTTGA 179 || |||||| |||||||| ||||||||| | |||||| |||||||||| ||||||| ||| Sbjct 358 TTGAAAAAA-AAGTACAAGAAGTATGTATAACTCATGGATAACACAGGTATCACGGCTGA 416 Query 180 TCCTGTCACACATCAGATAACAGCAAGTAATTCATGGTGGAAAGATCAAGAAGTATGTA 238 || |||||||||||||||||| || |||||||||||||||||||| ||||||||| ||| Sbjct 417 TCTTGTCACACATCAGATAACTGCTAGTAATTCATGGTGGAAAGAGCAAGAAGTAAGTA 475 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32802897991 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5