BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896143
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 313 2e-84
> AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:11627225-11630679 FORWARD
LENGTH=3455
Length=3455
Score = 313 bits (169), Expect = 2e-84
Identities = 216/239 (90%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 1 ATGAATAATTACCGTTTAAAAGATCCTACACCCCTTGGTAAAGAGTTTTTGGTTGACAAT 60
|||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 238 ATGAATAACTACCATTTAAAAGACCCTATACCCCTTGGTAAAGAGTTTTTGGTTGAAAAA 297
Query 61 TTTAACGAGAAGTTCAATCTCAATATAAACTATCGGTTCTTTAAAGAAAAGCTTGATCAG 120
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 298 TTTAATGAGAAGTTCAATCTCAATATAAACTATCGGTTCTTCAAAGAAAAGCTTAACCAG 357
Query 121 TT-AAAAAAGAAGTACAAAAAGTATGTACAGCTCATGAATAACACAGGCATCACGGTTGA 179
|| |||||| |||||||| ||||||||| | |||||| |||||||||| ||||||| |||
Sbjct 358 TTGAAAAAA-AAGTACAAGAAGTATGTATAACTCATGGATAACACAGGTATCACGGCTGA 416
Query 180 TCCTGTCACACATCAGATAACAGCAAGTAATTCATGGTGGAAAGATCAAGAAGTATGTA 238
|| |||||||||||||||||| || |||||||||||||||||||| ||||||||| |||
Sbjct 417 TCTTGTCACACATCAGATAACTGCTAGTAATTCATGGTGGAAAGAGCAAGAAGTAAGTA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5