BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896150
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02030.1 | Symbols: | F-box family protein | chr2:482335-48... 1330 0.0
AT2G05600.1 | Symbols: | F-box associated ubiquitination effec... 573 1e-162
> AT2G02030.1 | Symbols: | F-box family protein | chr2:482335-483829
FORWARD LENGTH=1005
Length=1005
Score = 1330 bits (720), Expect = 0.0
Identities = 867/936 (93%), Gaps = 18/936 (2%)
Strand=Plus/Plus
Query 27 aaaagaaatcaaacgaagaagaagagagtttgagaaaaTTCATATACCTAACGAAATCGT 86
||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 72 AAAAGAAATCAAACGAAGAAGAAAAGAGTTTGAGAAGATCCATATACCTAACGAAATCGT 131
Query 87 CGAAGAAATCATGGTGAGGCTTCCGGTGAAATCGCTCACGAGATTTCAAAGTGTGTCGAA 146
|||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 132 CGAAGAAATCTTGGTGAGGCTGCCGGTGAAATCGCTCACGAGATTTCAAACTGTGTCAAA 191
Query 147 ATACTGGAGAACTCTGATCACGTCCAAGGATTTCGGGGAAAGACACATGGCTCTTGAGAA 206
| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 192 ACACTGGAGAACTCTGATCACGTCGAAGTATTTCGGAAAAAGACACATGGCTCTTGAGAA 251
Query 207 AAGCAAAGGATGCAAACTCATTTTTGTCTGTGATGATTTTGAAGATCGTGCGGAGGACAC 266
||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 252 AAGCAAAGGATGCAAACTCCTTTTTGTTTGTGATGATTTTGTAGATCGTGCAGAGGACAC 311
Query 267 TCTGTTTTTAAAAACAGTTGCCTTGGAGAAGACGTCAGCTTCTGAGGGAGATGAACAAGC 326
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 312 TCTGTTTTTAAAAACAGTTGCCTTGGAGAAGACGTCAGTTTCTGAGGGAGATGAACAAGC 371
Query 327 TTTCGAATTCCAAGGATTTAATGGGTTTCTGGATATTTCCGAGAGCTGTGATGGCCTTAT 386
|||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 372 TTTCGAATTCGAAGGATATAAGGGGTTTCTCGATATTTCCGAGAGCTGTGATGGCCTTGT 431
Query 387 CTGCTTCTACGACACTAAAAGAGCAGTGGAAGTTATGAATCCGGCCACAACAATGTTCAT 446
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 432 CTGCTTCTACGACACTACAAGAGCAGTGGAAGTAATGAATCCGGCCACAACAATGTTCAT 491
Query 447 ACAACTCCCTCTATCGAGAATTCAACGGCTTTGTATATACAA---ATATCCA-A-----A 497
| ||||||||||||||||||| |||| ||||||||||||||| | | || | |
Sbjct 492 AGAACTCCCTCTATCGAGAATCCAACAGCTTTGTATATACAAGCCAAACCCGGAGGTGGA 551
Query 498 -CTCGGAG---GTTCAAGATCCAAATCCTGTTCCAGACCCAATCATGTCATGTTCTCAG- 552
|| |||| |||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 552 GCT-GGAGCCAGTTCAAGATCCAAATCCTGTTCTAGACCCAGTCATGACATGTTCTCAGA 610
Query 553 TTGGGGTTTGGGAAAGACAGCGTTAATGGAAGTTATAAACTAGTATGGATGTATAATACT 612
|||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 611 TTGGAGTT-GGGAAAGACAGCGTTAGTGGAAGTTATAAACTAGTATGGATGTATAATACT 669
Query 613 TCTCCTGCTACTCCTCCTACGTGCGAGGTTTTGGATTTAGAGGGaaaaaaaTGGAGGTTC 672
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 670 TCTCCTGCTACTCCTCCTACGTGCGAGGTTTTGGATTTAGATGGAAAAAAATGGAGGTTC 729
Query 673 GTGAATACTAATACTCTTGATCATCATAAGATCTTGTTCAATCAGAGGCCAGTGTTTGCA 732
|||||||||| | |||||||||||||| ||||||||| | |||||||||| |||||||||
Sbjct 730 GTGAATACTACTTCTCTTGATCATCATCAGATCTTGTGCGATCAGAGGCCGGTGTTTGCA 789
Query 733 AACGGATCACTCTACTGGCTCACGGGAGATGAACAAGGATATGCAACAACACAAACCAAA 792
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 790 AACGGATCACTCTACTGGCTCACGGGAGATGAGGAAGGATATGCAACAACACAAACCAAA 849
Query 793 CTCATAGTTTTCGATATT-CACACAGAGATGTTTCAAGTCATCCAAACACCGCCtttttt 851
||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 850 CTCATAGTTTTAGAT-TTACACACAGAGATGTTTCAAGTCATCCAAACACCGCCTTTTAT 908
Query 852 tACCCATGATGCATCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTCTCTGTAT 911
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TACCCGTGATGCCTCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTCTCTGTAT 968
Query 912 CTCTGAGTTGAAGAAAGATTGCAAGCAGGAGTTTTG 947
|| ||||||||||||||||||||||| ||||||||
Sbjct 969 TTCAGAGTTGAAGAAAGATTGCAAGCAAGAGTTTTG 1004
> AT2G05600.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:2072646-2073547 FORWARD LENGTH=720
Length=720
Score = 573 bits (310), Expect = 1e-162
Identities = 428/483 (89%), Gaps = 15/483 (3%)
Strand=Plus/Plus
Query 727 TTTGCAAACGGATCAC-TCTACTGGCTCACGGGAGATGAACAAGGATATGCAACAACACA 785
|||||||||||||||| || |||||||||| ||||||||| | ||| || |||||| | |
Sbjct 187 TTTGCAAACGGATCACTTC-ACTGGCTCACAGGAGATGAAGAGGGAGATCCAACAAGAGA 245
Query 786 AACCAAACTCATAGTTTTCGATATTCACACAGAGATGTTTCAAGTCATCCAAACACCGCC 845
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AACAAAACTCGTAGTTTTCGATATTCACACAGAGATGTTTCAAGTCATCCAAACACCGCC 305
Query 846 tttttttACCCATGATG-CATCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTC 904
|||| |||| | | ||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 306 TTTTATTACACGTAATGTC-TCTGCTGACAAGATTGGTTTATGCAATCTTGATGGTCGTC 364
Query 905 TCTGTATCTCTGAGTTGAAGAAAGATTGCAAGCAGGAGTTTTGGTGGAGAATTGAAGACA 964
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 365 TCTGTATCTCTGAGTTGAAGAAAGATTGCAAGCAAGAGTTTTGGTGGAGAGTTGAAGACA 424
Query 965 -C--CAACACATGGGAGAGGATCTTCTCGGTTGATTTGCTTTCTACTTCCACTTGGTTTG 1021
| |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 425 ACAACAACACATGGGAAAAGATCTTCTCGGTTGATTTGCATTCTACTTCCACTTGGTTTG 484
Query 1022 GTGGTATCACCTGGCAGCCTCTCACACCTTTAACCATCTCTAGGGACACCAATAAAGTCA 1081
|||||||||||| || ||||||||| ||||||||||| || | ||||||||||||||| |
Sbjct 485 GTGGTATCACCTCGCGGCCTCTCACGCCTTTAACCATTTCCAAGGACACCAATAAAGTTA 544
Query 1082 TTCTCTCACTT-CGCTATCAAGATA-ATCTCGTTGCCCTCGATCTTGATCCTAACTCT-T 1138
| ||||||||| || | |||||| | | ||||| ||| | |||||||||||| |||| |
Sbjct 545 TCCTCTCACTTACG-TCTCAAGAAAGA-CTCGTCGCCTTTGATCTTGATCCTGACTCAAT 602
Query 1139 CAGTTTGTCATTTGTATTTTTCTGGTTACTACGGCTTAGTATGT-CCTTATTTTCCAAGT 1197
|||| |||||||||||| ||||||||||| ||||||| ||| |||||||| ||||||
Sbjct 603 G-GTTTATCATTTGTATTTCTCTGGTTACTATGGCTTAGC-TGTTCCTTATTTGCCAAGT 660
Query 1198 TTT 1200
|||
Sbjct 661 TTT 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5