BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg896150 Length=1215 Score E Sequences producing significant alignments: (Bits) Value AT2G02030.1 | Symbols: | F-box family protein | chr2:482335-48... 1330 0.0 AT2G05600.1 | Symbols: | F-box associated ubiquitination effec... 573 1e-162 > AT2G02030.1 | Symbols: | F-box family protein | chr2:482335-483829 FORWARD LENGTH=1005 Length=1005 Score = 1330 bits (720), Expect = 0.0 Identities = 867/936 (93%), Gaps = 18/936 (2%) Strand=Plus/Plus Query 27 aaaagaaatcaaacgaagaagaagagagtttgagaaaaTTCATATACCTAACGAAATCGT 86 ||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| Sbjct 72 AAAAGAAATCAAACGAAGAAGAAAAGAGTTTGAGAAGATCCATATACCTAACGAAATCGT 131 Query 87 CGAAGAAATCATGGTGAGGCTTCCGGTGAAATCGCTCACGAGATTTCAAAGTGTGTCGAA 146 |||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| || Sbjct 132 CGAAGAAATCTTGGTGAGGCTGCCGGTGAAATCGCTCACGAGATTTCAAACTGTGTCAAA 191 Query 147 ATACTGGAGAACTCTGATCACGTCCAAGGATTTCGGGGAAAGACACATGGCTCTTGAGAA 206 | |||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| Sbjct 192 ACACTGGAGAACTCTGATCACGTCGAAGTATTTCGGAAAAAGACACATGGCTCTTGAGAA 251 Query 207 AAGCAAAGGATGCAAACTCATTTTTGTCTGTGATGATTTTGAAGATCGTGCGGAGGACAC 266 ||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| Sbjct 252 AAGCAAAGGATGCAAACTCCTTTTTGTTTGTGATGATTTTGTAGATCGTGCAGAGGACAC 311 Query 267 TCTGTTTTTAAAAACAGTTGCCTTGGAGAAGACGTCAGCTTCTGAGGGAGATGAACAAGC 326 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 312 TCTGTTTTTAAAAACAGTTGCCTTGGAGAAGACGTCAGTTTCTGAGGGAGATGAACAAGC 371 Query 327 TTTCGAATTCCAAGGATTTAATGGGTTTCTGGATATTTCCGAGAGCTGTGATGGCCTTAT 386 |||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||| | Sbjct 372 TTTCGAATTCGAAGGATATAAGGGGTTTCTCGATATTTCCGAGAGCTGTGATGGCCTTGT 431 Query 387 CTGCTTCTACGACACTAAAAGAGCAGTGGAAGTTATGAATCCGGCCACAACAATGTTCAT 446 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 432 CTGCTTCTACGACACTACAAGAGCAGTGGAAGTAATGAATCCGGCCACAACAATGTTCAT 491 Query 447 ACAACTCCCTCTATCGAGAATTCAACGGCTTTGTATATACAA---ATATCCA-A-----A 497 | ||||||||||||||||||| |||| ||||||||||||||| | | || | | Sbjct 492 AGAACTCCCTCTATCGAGAATCCAACAGCTTTGTATATACAAGCCAAACCCGGAGGTGGA 551 Query 498 -CTCGGAG---GTTCAAGATCCAAATCCTGTTCCAGACCCAATCATGTCATGTTCTCAG- 552 || |||| |||||||||||||||||||||| ||||||| ||||| ||||||||||| Sbjct 552 GCT-GGAGCCAGTTCAAGATCCAAATCCTGTTCTAGACCCAGTCATGACATGTTCTCAGA 610 Query 553 TTGGGGTTTGGGAAAGACAGCGTTAATGGAAGTTATAAACTAGTATGGATGTATAATACT 612 |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 611 TTGGAGTT-GGGAAAGACAGCGTTAGTGGAAGTTATAAACTAGTATGGATGTATAATACT 669 Query 613 TCTCCTGCTACTCCTCCTACGTGCGAGGTTTTGGATTTAGAGGGaaaaaaaTGGAGGTTC 672 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 670 TCTCCTGCTACTCCTCCTACGTGCGAGGTTTTGGATTTAGATGGAAAAAAATGGAGGTTC 729 Query 673 GTGAATACTAATACTCTTGATCATCATAAGATCTTGTTCAATCAGAGGCCAGTGTTTGCA 732 |||||||||| | |||||||||||||| ||||||||| | |||||||||| ||||||||| Sbjct 730 GTGAATACTACTTCTCTTGATCATCATCAGATCTTGTGCGATCAGAGGCCGGTGTTTGCA 789 Query 733 AACGGATCACTCTACTGGCTCACGGGAGATGAACAAGGATATGCAACAACACAAACCAAA 792 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 790 AACGGATCACTCTACTGGCTCACGGGAGATGAGGAAGGATATGCAACAACACAAACCAAA 849 Query 793 CTCATAGTTTTCGATATT-CACACAGAGATGTTTCAAGTCATCCAAACACCGCCtttttt 851 ||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| | Sbjct 850 CTCATAGTTTTAGAT-TTACACACAGAGATGTTTCAAGTCATCCAAACACCGCCTTTTAT 908 Query 852 tACCCATGATGCATCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTCTCTGTAT 911 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 TACCCGTGATGCCTCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTCTCTGTAT 968 Query 912 CTCTGAGTTGAAGAAAGATTGCAAGCAGGAGTTTTG 947 || ||||||||||||||||||||||| |||||||| Sbjct 969 TTCAGAGTTGAAGAAAGATTGCAAGCAAGAGTTTTG 1004 > AT2G05600.1 | Symbols: | F-box associated ubiquitination effector family protein | chr2:2072646-2073547 FORWARD LENGTH=720 Length=720 Score = 573 bits (310), Expect = 1e-162 Identities = 428/483 (89%), Gaps = 15/483 (3%) Strand=Plus/Plus Query 727 TTTGCAAACGGATCAC-TCTACTGGCTCACGGGAGATGAACAAGGATATGCAACAACACA 785 |||||||||||||||| || |||||||||| ||||||||| | ||| || |||||| | | Sbjct 187 TTTGCAAACGGATCACTTC-ACTGGCTCACAGGAGATGAAGAGGGAGATCCAACAAGAGA 245 Query 786 AACCAAACTCATAGTTTTCGATATTCACACAGAGATGTTTCAAGTCATCCAAACACCGCC 845 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 AACAAAACTCGTAGTTTTCGATATTCACACAGAGATGTTTCAAGTCATCCAAACACCGCC 305 Query 846 tttttttACCCATGATG-CATCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTC 904 |||| |||| | | ||| | |||| ||||||||||||||||||||||||||||||||||| Sbjct 306 TTTTATTACACGTAATGTC-TCTGCTGACAAGATTGGTTTATGCAATCTTGATGGTCGTC 364 Query 905 TCTGTATCTCTGAGTTGAAGAAAGATTGCAAGCAGGAGTTTTGGTGGAGAATTGAAGACA 964 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 365 TCTGTATCTCTGAGTTGAAGAAAGATTGCAAGCAAGAGTTTTGGTGGAGAGTTGAAGACA 424 Query 965 -C--CAACACATGGGAGAGGATCTTCTCGGTTGATTTGCTTTCTACTTCCACTTGGTTTG 1021 | |||||||||||| | |||||||||||||||||||| |||||||||||||||||||| Sbjct 425 ACAACAACACATGGGAAAAGATCTTCTCGGTTGATTTGCATTCTACTTCCACTTGGTTTG 484 Query 1022 GTGGTATCACCTGGCAGCCTCTCACACCTTTAACCATCTCTAGGGACACCAATAAAGTCA 1081 |||||||||||| || ||||||||| ||||||||||| || | ||||||||||||||| | Sbjct 485 GTGGTATCACCTCGCGGCCTCTCACGCCTTTAACCATTTCCAAGGACACCAATAAAGTTA 544 Query 1082 TTCTCTCACTT-CGCTATCAAGATA-ATCTCGTTGCCCTCGATCTTGATCCTAACTCT-T 1138 | ||||||||| || | |||||| | | ||||| ||| | |||||||||||| |||| | Sbjct 545 TCCTCTCACTTACG-TCTCAAGAAAGA-CTCGTCGCCTTTGATCTTGATCCTGACTCAAT 602 Query 1139 CAGTTTGTCATTTGTATTTTTCTGGTTACTACGGCTTAGTATGT-CCTTATTTTCCAAGT 1197 |||| |||||||||||| ||||||||||| ||||||| ||| |||||||| |||||| Sbjct 603 G-GTTTATCATTTGTATTTCTCTGGTTACTATGGCTTAGC-TGTTCCTTATTTGCCAAGT 660 Query 1198 TTT 1200 ||| Sbjct 661 TTT 663 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59688448005 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5