BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896190
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02500.1 | Symbols: ISPD, ATMEPCT, MCT | Nucleotide-diphosph... 1269 0.0
> AT2G02500.1 | Symbols: ISPD, ATMEPCT, MCT | Nucleotide-diphospho-sugar
transferases superfamily protein | chr2:670878-673155
REVERSE LENGTH=1116
Length=1116
Score = 1269 bits (687), Expect = 0.0
Identities = 822/886 (93%), Gaps = 13/886 (1%)
Strand=Plus/Plus
Query 23 TTACATT-TCCGACATTTTTATGTCCGAAGCTTGTAGTCAAATCGATCTCAGTTTCTCTG 81
|||| || |||||||||| | |||||||||||| |||||||| || ||| || ||||
Sbjct 63 TTAC-TTCTCCGACATTTCTGTGTCCGAAGCTTAAAGTCAAATTGAACTC---TTATCTG 118
Query 82 -GGCTTTAGCTATCGTTTC-CAAGTTCAAAAACTTGATTTTTTGAAAAGGGTTAATAGAA 139
|| ||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||
Sbjct 119 TGG-TTTAGCTATCG-TTCTCAAGTTCAAAAACTGGATTTTTCGAAAAGGGTTAATAGAA 176
Query 140 GATACAAAAGGGATGGTTTGTTATTGTCAATAAAGTGTTCTTCGTCTACTGGATTTGATA 199
| |||||||| |||| ||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 177 GCTACAAAAGAGATGCTTTATTATTGTCAATCAAGTGTTCTTCATCGACTGGATTTGATA 236
Query 200 ATAGCAATGCTGTTGTGAAGGAGAAAAGTGTCTCAGTGATTCTATTAGCTGGAGGTCAAG 259
||||||||| ||||||||||||||| ||||| || |||||||| ||||||||||||||||
Sbjct 237 ATAGCAATGTTGTTGTGAAGGAGAAGAGTGTATCTGTGATTCTTTTAGCTGGAGGTCAAG 296
Query 260 GCAAGAGAATGAAAATGAGTATGCCAAAGCAGTATATACCACTT-TTGGGTCAGCCAATT 318
|||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct 297 GCAAGAGAATGAAAATGAGTATGCCAAAGCAGTACATACCACTTCTT-GGTCAGCCAATT 355
Query 319 GCTTTGTATAGCTTTTTCACATTTTCACGTATGCCTCAAGTGAAGGAAATTGTTGTTGTA 378
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 356 GCTTTGTATAGCTTTTTCACGTTTTCACGTATGCCTGAAGTGAAGGAAATTGTAGTTGTA 415
Query 379 TGTGATCCATTTTTCAGAGACATTTTTGAAGAATACGAAGAATCAATTGATGTTGATCTC 438
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGTGATCCTTTTTTCAGAGACATTTTTGAAGAATACGAAGAATCAATTGATGTTGATCTT 475
Query 439 AGATTTGCTATTCCTGGGAAAGAAAGACAAGATTCTGTTTACAGTGGACTTCAGGAAGTC 498
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 AGATTCGCTATTCCTGGCAAAGAAAGACAAGATTCTGTTTACAGTGGACTTCAGGAAATC 535
Query 499 GATGTGAACTCTGAGCTTGTTTGCATCCACGACTCTGCCAGACCGCTGGTGAATTCTGAA 558
||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||
Sbjct 536 GATGTGAACTCTGAGCTTGTTTGTATCCACGACTCTGCCCGACCATTGGTGAATACTGAA 595
Query 559 GATGTCGTGAAGGTCCTTAAAGATGGTTCCGCGGTTGGCGCAGCCGTACTTGGTGTTCCT 618
||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 596 GATGTCGAGAAGGTCCTTAAAGATGGTTCCGCGGTTGGAGCAGCTGTACTTGGTGTTCCT 655
Query 619 GCTAAAGCTACAATCAAAGAGGTCAATTCTGAATCGCTTGTGGTGAAAACTCTCGACAGA 678
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 GCTAAAGCTACAATCAAAGAGGTCAATTCTGATTCGCTTGTGGTGAAAACTCTCGACAGA 715
Query 679 AAAACACTTTGGGAAATGCAGACACCACAGGTGATCAAACCCGAGTTATTGAAGAGAGG- 737
||||| || |||||||||||||||||||||||||||||||| ||| ||||||| | |||
Sbjct 716 AAAACCCTATGGGAAATGCAGACACCACAGGTGATCAAACCAGAGCTATTGAAAA-AGGG 774
Query 738 TTTCGAGCTTGTGAAAAGAGAAGGTCTAGAGGTAACAGATGATGTTTCGATTGTTGAATA 797
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 775 TTTCGAGCTTGTAAAAAGTGAAGGTCTAGAGGTAACAGATGACGTTTCGATTGTTGAATA 834
Query 798 CCTCAAACATCCAGTTTTTGTCACTCAAGGATCTTATACAAACATCAAGGTTACAACACC 857
|||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 835 CCTCAAGCATCCAGTTTATGTCTCTCAAGGATCTTATACAAACATCAAGGTTACAACACC 894
Query 858 TGATGACTTACTGCTTGCTGAGAGAATCTTGAGCGAGGACTCATGA 903
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGATGATTTACTGCTTGCTGAGAGAATCTTGAGCGAGGACTCATGA 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5