BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896196

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48040.1 | Symbols:  | Protein phosphatase 2C family protein...   531    3e-150


> AT1G48040.1 | Symbols:  | Protein phosphatase 2C family protein 
| chr1:17719740-17721841 REVERSE LENGTH=1619
Length=1619

 Score =  531 bits (287),  Expect = 3e-150
 Identities = 395/447 (88%), Gaps = 8/447 (2%)
 Strand=Plus/Plus

Query  1    ATGGTTACTGAGGCTGAGATCAGGGTTCTTGACGTTAAGTGCCATATCTCCGCTGCTAAA  60
            |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  162  ATGGTTGCTGAAGCTGAGATCAGGGTTCTTGACGTTAAGTGCCATATCTCCGCTCCTAAA  221

Query  61   GATCAGAAGAATTTTCATATCGACGAAGTTCGTGTTTCTGAGTCTGTCTGTGCTGAGATT  120
            ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  222  GATCAGAAGAATTTTCAGATCGACGAAGTTCGTGTTTCTGAGTCTGTCCGTGCTGAGATT  281

Query  121  TCCGGTTCTGCTGAAACGCCTAGATTCAGATCGAAATATCCCTTGAAATGGATCATGGCT  180
            || ||||| |||||||||||| ||||| |||||    ||   |||   || | | |  | 
Sbjct  282  TCGGGTTCCGCTGAAACGCCTCGATTCGGATCG-GGCATGAGTTG---TGTAAC-T-AC-  334

Query  181  TA-TATTAGTGAATCAACCAGTGAGTTTATCGCAACTATACGTTCAGGGAGCTTTGCTGA  239
            ||  ||| | |||||  ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct  335  TACCATTGGAGAATCCGCCAGTGACTTTATCCCAACTATACGTTCAGGGAGCTTTGCTGA  394

Query  240  CATTCGAAGCCAAGAAACAATGGAGGATGAACACATTTGCATAGATGACTTGTCAGCTCA  299
            ||||||||| | |||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  395  CATTCGAAGTCGAGAAACCATGGAGGATGAACACATTTGCATAGATGATTTGTCAGCTCA  454

Query  300  TCTTGGATCCTTTAACCTCTCGGTACCAAGTGCTTTTTATGGCGTGTTTGATGGACATGG  359
             ||||||||||  ||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  455  CCTTGGATCCTACAACTTCTCGGTACCAAGTGCTTTTTATGGTGTGTTTGATGGTCATGG  514

Query  360  TGGACCTGAGGCAGCAGTTTTTATGAAGGAGAACTTAACAAGATTGTTTTTTCAAGATGT  419
            ||| |||||||||||| |||| |||||||||||||| || ||||||||||| ||||||| 
Sbjct  515  TGGGCCTGAGGCAGCAATTTTCATGAAGGAGAACTTGACTAGATTGTTTTTCCAAGATGC  574

Query  420  TGTATTTTCAGAGATGCCCTCCATTGT  446
            ||| ||| |||||||||||||||||||
Sbjct  575  TGTGTTTCCAGAGATGCCCTCCATTGT  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5