BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896203
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02680.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 272 2e-72
AT2G02620.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 182 4e-45
AT2G40050.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 62.1 5e-09
AT1G61840.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 60.2 2e-08
> AT2G02680.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:745775-748573 FORWARD LENGTH=1950
Length=1950
Score = 272 bits (147), Expect = 2e-72
Identities = 382/489 (78%), Gaps = 42/489 (9%)
Strand=Plus/Plus
Query 1 ATGAACTTGATCGGAGAATTTCAT-AGGGGAGAAATTGATGGGAAACCATATCTCT-TAT 58
||| ||||| |||||||||||| | ||| | ||||| ||||||||||||| ||| | |||
Sbjct 1 ATGGACTTGTTCGGAGAATTTCGTAAGGTG-GAAATCGATGGGAAACCATTTCT-TGTAT 58
Query 59 ACCACAAGGTTATGAAACCCTTACCACAAATA-A-A---C---TTTC-CCGATGAAGAAA 109
||||||| ||||||||||| |||||||||||| | | | | | ||||||||||||
Sbjct 59 ACCACAAAGTTATGAAACCATTACCACAAATACACACCCCAAACTCCTCCGATGAAGAAA 118
Query 110 CCACCATCGTAAAACCTTTATCCATCCAAAACAAAACAAAC-TCCTCCGAT-AAGGTAGC 167
||||||||| |||||| ||||| ||||||||| || |||| ||||||||| || | | |
Sbjct 119 CCACCATCGAAAAACCATTATCAATCCAAAAC-GAAGAAACTTCCTCCGATGAA-GAAAC 176
Query 168 CATTGATTCTGGCGATGACCTCCCTCTTCCGCCTGTTTTCGTATGCCCTGCA-T-CACAA 225
|||||| || || || |||| |||||||| | | |||||| ||||||| | | || |
Sbjct 177 CATTGACTCCGGTGACAACCTACCTCTTCCACTTCTTTTCGCATGCCCT--ATTGTACGA 234
Query 226 AACACCTCAACAATTG-TTACTGAGAATATTAAACTGAC-GGGTGA--AGACGG-AGATC 280
||||||||| | || ||| ||| ||||||| | | || || ||| | | || || ||
Sbjct 235 CTCACCTCAAC-AGTGATTATTGACAATATTACA-TTACAGGATGATCA-AGGGAAG-TC 290
Query 281 AAATACCTCTAATA-TTTTTCAAGCTCAAGAC-TTCCCCTCTCTTTGGTGACAATTTGAA 338
| || || | |||||||| |||||||| | ||||| || |||||||||| |
Sbjct 291 -AGTA----GAACACTTTTTCAATCTCAAGACATCCCCCT-TCCATGGTGACAATACG-T 343
Query 339 GGGTTG-TCGTCATGTCGTACTCCCTTTGTTTTGGTGCAACAATAAAGAAGCTGATCCAG 397
|||| || | || |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 344 CAGTTGATCATGATCCCGTACTACCTCTGTTTTGGTGCAACAATAAAGAAGCTGATCCAG 403
Query 398 AAAACGATTGCCGT-ATTTTCAGAACCCAAAAGGTCGGCACATACTATTATTTTTGTGTC 456
| ||||||||| || |||| |||| || ||||||||||||| ||||||||| ||||||
Sbjct 404 AGAACGATTGC-GTTATTTGCAGAGCCGAAAAGGTCGGCACGGACTATTATTACTGTGTC 462
Query 457 GATTGTGAT 465
|| ||||||
Sbjct 463 GAGTGTGAT 471
> AT2G02620.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:717256-719380 FORWARD LENGTH=2125
Length=2125
Score = 182 bits (98), Expect = 4e-45
Identities = 367/489 (75%), Gaps = 50/489 (10%)
Strand=Plus/Plus
Query 1 ATGAACTTGATCGGAGAATTTCATAGGGGAGAAATTGATGGGAAACCATATCTCTTATAC 60
||| |||| ||||||||||||| | | ||||||| || ||||||||||||||| |||||
Sbjct 44 ATGGACTTCTTCGGAGAATTTCAGAAGAGAGAAATCGAGGGGAAACCATATCTCGTATAC 103
Query 61 CACAAGGTTATGAAA-CC-CTTACCACAAA---TAAACTTTCC-C-GATGAAGAAACCAC 113
| || ||||| ||| || | | ||||| |||| ||| | |||||| |||||||
Sbjct 104 TAAAACGTTAT-AAAGCCAC-AAATACAAACCCCAAAC--TCCTCTGATGAAAAAACCAC 159
Query 114 CATCGTA-AAACCTTTATCCATCCAAAACAAAACAAACTCCTCCGATAAGGTAGCCATTG 172
||||| | || || ||||| |||| || || ||| |||| | |||||||||
Sbjct 160 CATCG-ATAATCCATTATCAATCC--AA-AATTTAAA---CTCC----A--TAGCCATTG 206
Query 173 ATTCTGGCGATGACCTCCCTCTTCCGCCTGTTTTCGTATGCCCTGCA-TCAC-AAAACAC 230
|||| ||||| | ||||||||| | ||| ||||| ||||||||| | | || | | |
Sbjct 207 ATTCCGGCGACAATCTCCCTCTTGCACCTCTTTTCATATGCCCTG-ATTTACGATATC-G 264
Query 231 CTCAACA---ATTGTTACTGAGAATATTAAACTGACGGGTGAAGACGGAGATCA-AATAC 286
| |||| | || | | || ||||||| | | |||||||||| || | | | | ||
Sbjct 265 ATTAACAGCGACTG-T-C-GATAATATTACAGTCTCGGGTGAAGATGGGGGT-ATATTA- 319
Query 287 CTCT-A-ATATTTTTCAAGCTCAAGACTTCCCCTCTCTTTGGTGACAATTTGAAGGGTTG 344
|| | | | ||||||||||||||||||||||||||| ||||||| | | | | |
Sbjct 320 CT-TGACCTCTTTTTCAAGCTCAAGACTTCCCCTCTCCATGGTGAC-A-GT-ACGTCATA 375
Query 345 TCGTCATGTCGTACTCCCTTTGTTTTGGTGCAACAATAAAGAAGCTGATCCAGAAAACGA 404
| |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 376 TTATCATGTCGTACTCCCTCTGTTTTGGTGCAACAATAAAGAAGCTGATCCAGACATGGA 435
Query 405 TTGCCGTATTTT-CAGAACCCAA-AAGGTCGGCACATACTATTATTTTTGTGTCGAT-TG 461
|||| || |||| | ||| | | |||||||| |||| |||||||| |||||| | ||
Sbjct 436 TTGCGGT-TTTTGC-GAAGGCGATAAGGTCGGTACATGCTATTATTACTGTGTC-ACGTG 492
Query 462 TGATGAAAG 470
|||||||||
Sbjct 493 TGATGAAAG 501
> AT2G40050.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:16723881-16725774 REVERSE LENGTH=1894
Length=1894
Score = 62.1 bits (33), Expect = 5e-09
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 355 GTACTCCCTTTGTTTTGGTGCAACAATAAAGAA 387
|||||||||||||||||||||||||||||||||
Sbjct 273 GTACTCCCTTTGTTTTGGTGCAACAATAAAGAA 305
> AT1G61840.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:22847389-22849833 FORWARD LENGTH=2445
Length=2445
Score = 60.2 bits (32), Expect = 2e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 356 TACTCCCTTTGTTTTGGTGCAACAATAAAGAA 387
||||||||||||||||||||||||||||||||
Sbjct 281 TACTCCCTTTGTTTTGGTGCAACAATAAAGAA 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5