BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896223
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, ... 963 0.0
> AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-,
and HSP90-like ATPase family protein | chr4:7975191-7987620
FORWARD LENGTH=8252
Length=8252
Score = 963 bits (521), Expect = 0.0
Identities = 607/650 (93%), Gaps = 0/650 (0%)
Strand=Plus/Plus
Query 260 TTACAAGTGTCAAGTTACTTAGTGATATTGGTTTTAAGACCAAAGTTTGCCTCGATGATG 319
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 6092 TTACAAGTGTCAAGTTACTTAGTGATATTGGTTTTAAGACCAAAGTTTCCCTCGATGATG 6151
Query 320 CTCTGGAAATCCTGGAAGCTTGGGTACATTGTGGAGACTCTTTCAAATCAAGCATATCTC 379
|| ||||| |||| ||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 6152 CTTTGGAAGTCCTAGAATCTTGGGTACACTGTGGAGACTCTTTCAAATCAAGCATCTCTC 6211
Query 380 AGATTACCAGATTTTACAAATATTTGTGGAATGAAATGGCTGATTCAAAGCAGAAAATTA 439
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 6212 AGATTACCAGATTTTACAAATATTTGTGGAATGAAATGGCTGATTCAAAACAGAAAATTA 6271
Query 440 CTGAAAAGCTCCGTACTCTACCATCTGTATTTGTACCACACAAAATTGGAAGTAGGCAGA 499
|||||||||| | |||||| || ||||| ||||||||||| ||||| |||||||||||
Sbjct 6272 CTGAAAAGCTTCATACTCTTCCGTCTGTGTTTGTACCACATGGAATTGCAAGTAGGCAGA 6331
Query 500 ATGATCTGATAACTGGAATATTCTTGTCACTTGATGATGTATACTGGAATGATTCCGCTG 559
||||| ||||| | |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 6332 ATGATATGATATCGGGAATATTCTTGTCACTTGATGATGTTTACTGGAATGATTCTGCTG 6391
Query 560 GCGTTTTAGACGAGATAAAAGAGATCAGTTCGAAGATCAGCAGTGTTGTGGAATCATTGC 619
|||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 6392 GCGTTTTAGATGAGATAAAAGAGATCAGTTCGCAGATCAGCAGTGTTGTGGAACCATTGC 6451
Query 620 ATAGGAAAACATTGTGCAATATTTATCCAGGTCTCCGTGACTTTTTTGTGAATGGGTGTG 679
||| ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 6452 GTAGAAAAACATTGGGCAATATCTATCCAGGTCTACATGACTTTTTTGTGAATGGGTGTG 6511
Query 680 GAGTACCTGAGACGCCTTCTTTTCAAGAGTACCTTAAAATTCTAGGACAGTTTGCACATT 739
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 6512 GAGTACCTGAGACGCCTTCGTTTCAAGAGTACCTTAAAATTCTAGGGCAGTTTGCACATA 6571
Query 740 ATGTGTCACCTTCATGTGCTGCCAAGGCTGTCTTCAAAATTTTCCTGAAGTGGAGTGATG 799
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 6572 ATGTGTCACCCTCATCTGCCGCCAAGGCTGTCTTCAAAATTTTCCTGAAGTGGAGTGATG 6631
Query 800 ACTTGAACTCTGGCAAATCTTCGGAAGATGTTGTTCATTTTAAAGAGAGACTTTCAGAAC 859
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 6632 ACTTGAACTCTGGCAAATCTTCCGAAGATGTTATTCATTTTAAAGAGAGACTTTCAGAAC 6691
Query 860 TTGAGTACACTGTGCTTCCTACTGAAAATGATAAGTGGGTTTCCTTACAC 909
| ||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 6692 TGGAGTACACTGTACTCCCTACTGAAAATGATAAGTGGGTTTCCTTGCAC 6741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5