BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896231
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13770.1 | Symbols: CYP83A1, REF2 | cytochrome P450, family ... 1170 0.0
> AT4G13770.1 | Symbols: CYP83A1, REF2 | cytochrome P450, family
83, subfamily A, polypeptide 1 | chr4:7990485-7992311 REVERSE
LENGTH=1735
Length=1735
Score = 1170 bits (633), Expect = 0.0
Identities = 797/873 (91%), Gaps = 24/873 (3%)
Strand=Plus/Plus
Query 385 GCTAGGAGAATGATGAATAAGATCAACAAGGCCGCCGATAAATCCGAAGTGGTCGATATA 444
|||||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 480 GCTAGGAGGATGATGGATAAGATCAACAAGGCCGCGGATAAATCCGAAGTAGTCGATATA 539
Query 445 AGCGAGCTTATGTTGACGTTCACGAACTCTGTTGTGTGTAGACAAGCGTTCGGGAAGAAG 504
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 AGTGAGCTTATGTTGACCTTCACGAACTCGGTTGTGTGTAGACAAGCGTTCGGGAAGAAG 599
Query 505 TACAATGAAGATGGGGAAGAGATGAAGAGGTTCATCAAGATTATTTATGGGACTCAAAGC 564
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 TACAATGAAGATGGAGAAGAGATGAAGAGGTTCATCAAGATTCTTTATGGGACTCAAAGC 659
Query 565 GTTTTGGGGAATAtttttttCTCTGATTTTTTCCCATATTCTAGTTTTCTCGATGATTTG 624
||||||||||| || ||||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 660 GTTTTGGGGAAGATCTTTTTCTCTGATTTTTTCCCATATTGTGGCTTTCTTGATGATTTA 719
Query 625 TCAGGCCTCACAGTTTATATGAAAGAGTGTTTTGAAAGACAAGACACTTATATTCAAGAG 684
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 TCAGGCCTCACAGCTTATATGAAAGAGTGTTTCGAAAGACAAGACACTTATATTCAAGAG 779
Query 685 ATTGTCAATGAGACTCTTGATCCCAAGAG-GTTCAAGCCCGAAACCGAGAGCATGATCGA 743
||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| ||
Sbjct 780 GTTGTCAATGAGACGCTTGATCCTAAGAGAGT-CAAGCCCGAAACCGAGAGCATGATTGA 838
Query 744 TCTCTTGATGGAGATCTACAAAGAACAACCTTTCGCTTCTGAGTTCACTGTAGATAATG- 802
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 TCTCTTGATGGGGATCTACAAAGAACAACCTTTCGCTTCTGAGTTTACTGTAGATAATGT 898
Query 803 -A------T-ATC--G--TA--GT-G-G-CGGGTACGGATACAGCAGCTGCGGCGGTTGT 845
| | ||| | || || | | |||| || ||||| |||||||||||||||||
Sbjct 899 CAAAGCCGTCATCTTGGATATTGTAGTGGCGGGAACAGATACTGCAGCTGCGGCGGTTGT 958
Query 846 GTGGGGAATGACGTATCTAATGAAGTACCCTCAAGTGATGAAGAATGCTCAAGCAGAAGT 905
|||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 959 GTGGGGGATGACGTATCTAATGAAGTACCCACAAGTGTTGAAGAAAGCTCAAGCAGAAGT 1018
Query 906 GAGAGACTATATGAAAGA-ACAAGGGTT-AACATTCGTTACTGAAGAAGACGTCAAGAAC 963
|||||| ||||||||||| | |||| || ||| |||||||||||||| || |||||||||
Sbjct 1019 GAGAGAGTATATGAAAGAGA-AAGG-TTCAACGTTCGTTACTGAAGACGATGTCAAGAAC 1076
Query 964 CTTCCTTACTTCAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAGCCGGTCATACCTCTC 1023
|||||||||||||||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 1077 CTTCCTTACTTCAGAGCCTTAGTTAAAGAAACCCTAAGGATCGAACCAGTGATTCCTCTC 1136
Query 1024 CTTATCCCTCGTGCGTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCGGCCGGG 1083
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1137 CTTATCCCTCGTGCTTGCATTCAAGATACCAAGATCGCCGGTTACGACATCCCCGCAGGA 1196
Query 1084 ACAACGGTCAACGTCAACGCCTGGGCCGTGTCACGTGACGAGAAGGAGTGGGGACCGAAC 1143
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1197 ACAACGGTCAACGTCAACGCGTGGGCCGTGTCACGTGACGAGAAAGAATGGGGACCGAAC 1256
Query 1144 CCTGACGAGTTCAGGCCCGAGAGGTTTCTTGAGAAGGAGGTTGACTTCAAAGGCACAGAC 1203
||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1257 CCTGATGAGTTTAGGCCCGAGAGGTTTCTTGAGAAGGAAGTTGACTTCAAAGGCACGGAC 1316
Query 1204 TATGAGTTTATACCATTCGGGTCAGGCCGGAGA 1236
|| ||||||||||| ||||||||||||||||||
Sbjct 1317 TACGAGTTTATACCGTTCGGGTCAGGCCGGAGA 1349
Score = 398 bits (215), Expect = 8e-110
Identities = 255/274 (93%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 111 GCTTAACCCACAACGGTTCTTTGCTGGATGGGCCAAGAAATACGGACCAATCTTGTCATA 170
||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 173 GCTTAACCCACAACGCTTCTTCGCTGGATGGGCCAAAAAATACGGTCCAATCTTGTCATA 232
Query 171 CAAGATAGGAACCAGAACAATGGTGGTGATATCTTCAGCTGAGTTAGCTAAAGAGCTTCT 230
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 233 CAGGATAGGAAGCAGAACAATGGTGGTGATATCTTCAGCTGAGCTAGCTAAAGAGCTTCT 292
Query 231 CAAGATGCAAGATGTCAACTTTGCCGACCGGCCTCCACACCGTGGCCACGAGTTCATATC 290
||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 293 CAAGACGCAAGATGTCAACTTTGCGGACCGGCCTCCACATCGTGGCCATGAGTTCATATC 352
Query 291 CTACTGCCGGCGTGATCACATGGCATTGAACCACTACACACCTTATTACCGAGAGATAAG 350
|||| || |||||| |||||||||| |||||||||||||| |||||||||||||||||
Sbjct 353 CTACGGCAGGCGTG---ACATGGCATTAAACCACTACACACCGTATTACCGAGAGATAAG 409
Query 351 GAAGATGGGGATGAACCACTTGTTCTCACCCACA 384
|||||||||||||||||||||||||||||| |||
Sbjct 410 GAAGATGGGGATGAACCACTTGTTCTCACCAACA 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5