BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896233

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65020.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...  95.3    3e-19


> AT1G65020.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant 
structures; EXPRESSED DURING: 13 growth stages; CONTAINS 
InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits 
to 69 proteins in 27 species: Archae - 0; Bacteria - 18; 
Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes 
- 7 (source: NCBI BLink). | chr1:24154344-24156605 REVERSE 
LENGTH=1233
Length=1233

 Score = 95.3 bits (51),  Expect = 3e-19
 Identities = 57/60 (95%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  88   TGGCTGAGGTCAAGAAACAAGCTTCTGTTCTGGAATCATATCTTGAACAGAGGGGAGTTA  147
            |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  435  TGGCGGAGGTCAAGAAACAAGCTTCAGTTCTTGAATCATATCTTGAACAGAGGGGAGTTA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5