BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896238

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, ...   532    6e-151


> AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, 
and HSP90-like ATPase family protein | chr4:7975191-7987620 
FORWARD LENGTH=8252
Length=8252

 Score =  532 bits (288),  Expect = 6e-151
 Identities = 330/351 (94%), Gaps = 0/351 (0%)
 Strand=Plus/Plus

Query  1     AATGATTCCGCTGGCGTTTTAGACGAGATAAAAGAGATCAGTTCGAAGATCAGCAGTGTT  60
             |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct  6379  AATGATTCTGCTGGCGTTTTAGATGAGATAAAAGAGATCAGTTCGCAGATCAGCAGTGTT  6438

Query  61    GTGGAATCATTGCATAGGAAAACATTGTGCAATATTTATCCAGGTCTCCGTGACTTTTTT  120
             |||||| |||||| ||| ||||||||| ||||||| ||||||||||| | ||||||||||
Sbjct  6439  GTGGAACCATTGCGTAGAAAAACATTGGGCAATATCTATCCAGGTCTACATGACTTTTTT  6498

Query  121   GTGAATGGGTGTGGAGTACCTGAGACGCCTTCTTTTCAAGAGTACCTTAAAATTCTAGGA  180
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  6499  GTGAATGGGTGTGGAGTACCTGAGACGCCTTCGTTTCAAGAGTACCTTAAAATTCTAGGG  6558

Query  181   CAGTTTGCACATTATGTGTCACCTTCATGTGCTGCCAAGGCTGTCTTCAAAATTTTCCTG  240
             |||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct  6559  CAGTTTGCACATAATGTGTCACCCTCATCTGCCGCCAAGGCTGTCTTCAAAATTTTCCTG  6618

Query  241   AAGTGGAGTGATGACTTGAACTCTGGCAAATCTTCGGAAGATGTTGTTCATTTTAAAGAG  300
             ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct  6619  AAGTGGAGTGATGACTTGAACTCTGGCAAATCTTCCGAAGATGTTATTCATTTTAAAGAG  6678

Query  301   AGACTTTCAGAACTTGAGTACACTGTGCTTCCTACTGAAAATGATAAGTGG  351
             |||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct  6679  AGACTTTCAGAACTGGAGTACACTGTACTCCCTACTGAAAATGATAAGTGG  6729



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5