BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896243
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05645.1 | Symbols: | unknown protein; Has 30201 Blast hits... 278 5e-74
> AT2G05645.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:2101497-2102111
REVERSE LENGTH=615
Length=615
Score = 278 bits (150), Expect = 5e-74
Identities = 362/460 (79%), Gaps = 32/460 (7%)
Strand=Plus/Minus
Query 1 ATGCGAAGGAGGGCCACAAAAGAGAGGCT-GAGGAATCAGAAGCTCAAAAGGGTC----G 55
||||||| |||||| | | | |||||| | |||| |||| |||| | |||||||| |
Sbjct 444 ATGCGAATGAGGGCTAGAGAGGAGAGG-TCGAGGCATCAAAAGCAC-AAAGGGTCGATGG 387
Query 56 A-AACCCCAA-CAGGAGGCTGCCAAACCATCCA-AAGAGCCAAAGAAAGCCTTTCGATTG 112
| ||||| || || | | || | ||||||||| || | ||||||||| ||| ||||||
Sbjct 386 ACAACCCTAACCA--ATGATGGCGAACCATCCACAACA-CCAAAGAAAACCTCTCGATTC 330
Query 113 AAACTCCAACACACGAAATCGACACGCACGGAGTGGACAGAGGCTTCCGGCGTGTGGGAG 172
|||||||||||||| ||||| ||||| || |||||||| | |||| |||||||||||
Sbjct 329 AAACTCCAACACACAAAATCAACACGTACAAAGTGGACAAAAGCTTTAAGCGTGTGGGAG 270
Query 173 TAAGCTGTCCTCAAGGCGAACAACCCGACACAGTGAAACCCAGGACTCCGGCAGACACGA 232
|||| ||||||||| ||||||||| ||||||| |||||||| ||||| |||| || ||
Sbjct 269 TAAGTTGTCCTCAATGCGAACAACTCGACACAAAGAAACCCATAACTCCAGCAGGCAAGA 210
Query 233 GCCGAAACGGGA-CGGTTAGACCAAGAGAGATCTTGGAAAAAATGAGTCCGAGCAGAAG- 290
||| ||| | | ||||||||||||||||||||||||||||||| | ||| | |||
Sbjct 209 GCC-AAAATGCAGGGGTTAGACCAAGAGAGATCTTGGAAAAAATGTGACCG-GTT-AAGG 153
Query 291 AGGAGAAGCGACACCACGGCACGGCACAGCCA-AGGGAAGCACTCTCGACGATC-GTAAA 348
|||||| |||||||||| | ||||| | ||| |||||| |||||| | | | |||
Sbjct 152 AGGAGAGGCGACACCAC---ATT--ACAGC-ATAGGAAAGCACGCTCGACCACCTG-AAA 100
Query 349 CACCAGGAAGAAGGCGATCTGGGA-CAGATCTACAAACAACAGCTTGCTCCGCAGCTTAA 407
|||||| |||||||| | | | ||||||||||||||| ||||| | | | |||| |
Sbjct 99 CACCAGAAAGAAGGC-ACCCCAAAACAGATCTACAAACAAAAGCTT-C-CAAC-GCTTGA 44
Query 408 GATGCGAGACGCTAGGACCGAAAATCACAGCCTCCACCTT 447
|||||||||| ||||||||| |||||| ||| ||||||||
Sbjct 43 GATGCGAGACTCTAGGACCGGAAATCAAAGCATCCACCTT 4
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5