BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896244

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13770.1 | Symbols: CYP83A1, REF2 | cytochrome P450, family ...   630    5e-180


> AT4G13770.1 | Symbols: CYP83A1, REF2 | cytochrome P450, family 
83, subfamily A, polypeptide 1 | chr4:7990485-7992311 REVERSE 
LENGTH=1735
Length=1735

 Score =  630 bits (341),  Expect = 5e-180
 Identities = 394/420 (94%), Gaps = 2/420 (0%)
 Strand=Plus/Plus

Query  385  GCTAGGAGAATGATGAATAAGATCAACAAGGCCGCCGATAAATCCGAAGTGGTCGATATA  444
            |||||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  480  GCTAGGAGGATGATGGATAAGATCAACAAGGCCGCGGATAAATCCGAAGTAGTCGATATA  539

Query  445  AGCGAGCTTATGTTGACGTTCACGAACTCTGTTGTGTGTAGACAAGCGTTCGGGAAGAAG  504
            || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  540  AGTGAGCTTATGTTGACCTTCACGAACTCGGTTGTGTGTAGACAAGCGTTCGGGAAGAAG  599

Query  505  TACAATGAAGATGGGGAAGAGATGAAGAGGTTCATCAAGATTATTTATGGGACTCAAAGC  564
            |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  600  TACAATGAAGATGGAGAAGAGATGAAGAGGTTCATCAAGATTCTTTATGGGACTCAAAGC  659

Query  565  GTTTTGGGGAATAtttttttCTCTGATTTTTTCCCATATTCTAGTTTTCTCGATGATTTG  624
            ||||||||||| || ||||||||||||||||||||||||| | | ||||| |||||||| 
Sbjct  660  GTTTTGGGGAAGATCTTTTTCTCTGATTTTTTCCCATATTGTGGCTTTCTTGATGATTTA  719

Query  625  TCAGGCCTCACAGTTTATATGAAAGAGTGTTTTGAAAGACAAGACACTTATATTCAAGAG  684
            ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  720  TCAGGCCTCACAGCTTATATGAAAGAGTGTTTCGAAAGACAAGACACTTATATTCAAGAG  779

Query  685  ATTGTCAATGAGACTCTTGATCCCAAGAG-GTTCAAGCCCGAAACCGAGAGCATGATCGA  743
             ||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| ||
Sbjct  780  GTTGTCAATGAGACGCTTGATCCTAAGAGAGT-CAAGCCCGAAACCGAGAGCATGATTGA  838

Query  744  TCTCTTGATGGAGATCTACAAAGAACAACCTTTCGCTTCTGAGTTCACTGTAGATAATGT  803
            ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  839  TCTCTTGATGGGGATCTACAAAGAACAACCTTTCGCTTCTGAGTTTACTGTAGATAATGT  898


 Score =  398 bits (215),  Expect = 6e-110
 Identities = 255/274 (93%), Gaps = 3/274 (1%)
 Strand=Plus/Plus

Query  111  GCTTAACCCACAACGGTTCTTTGCTGGATGGGCCAAGAAATACGGACCAATCTTGTCATA  170
            ||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct  173  GCTTAACCCACAACGCTTCTTCGCTGGATGGGCCAAAAAATACGGTCCAATCTTGTCATA  232

Query  171  CAAGATAGGAACCAGAACAATGGTGGTGATATCTTCAGCTGAGTTAGCTAAAGAGCTTCT  230
            || |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  233  CAGGATAGGAAGCAGAACAATGGTGGTGATATCTTCAGCTGAGCTAGCTAAAGAGCTTCT  292

Query  231  CAAGATGCAAGATGTCAACTTTGCCGACCGGCCTCCACACCGTGGCCACGAGTTCATATC  290
            ||||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct  293  CAAGACGCAAGATGTCAACTTTGCGGACCGGCCTCCACATCGTGGCCATGAGTTCATATC  352

Query  291  CTACTGCCGGCGTGATCACATGGCATTGAACCACTACACACCTTATTACCGAGAGATAAG  350
            |||| || ||||||   |||||||||| |||||||||||||| |||||||||||||||||
Sbjct  353  CTACGGCAGGCGTG---ACATGGCATTAAACCACTACACACCGTATTACCGAGAGATAAG  409

Query  351  GAAGATGGGGATGAACCACTTGTTCTCACCCACA  384
            |||||||||||||||||||||||||||||| |||
Sbjct  410  GAAGATGGGGATGAACCACTTGTTCTCACCAACA  443


 Score =  141 bits (76),  Expect = 1e-32
 Identities = 102/114 (89%), Gaps = 3/114 (3%)
 Strand=Plus/Plus

Query  1    ATGGAAG--AT-ATCATCGGCGTCGTGGCTCTCGCCGCGGTTCTCCTCTTCTTCATGTAC  57
            |||||||  || ||||||||||| ||||||||||||||||||||||| |||||| | |||
Sbjct  30   ATGGAAGATATCATCATCGGCGTGGTGGCTCTCGCCGCGGTTCTCCTTTTCTTCCTCTAC  89

Query  58   CAAAAACCGAAAACCAAACGGTACAAGCTGCCTCCTGGACCATCTCCGCTTCCG  111
            ||||||||||||||||||||||||||||| ||||| || ||||| || ||||||
Sbjct  90   CAAAAACCGAAAACCAAACGGTACAAGCTACCTCCAGGGCCATCACCACTTCCG  143



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39584507836


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5