BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896246

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G02850.1 | Symbols: ARPN | plantacyanin | chr2:826404-827812...   638    0.0  


> AT2G02850.1 | Symbols: ARPN | plantacyanin | chr2:826404-827812 
REVERSE LENGTH=708
Length=708

 Score =  638 bits (345),  Expect = 0.0
 Identities = 376/391 (96%), Gaps = 2/391 (1%)
 Strand=Plus/Plus

Query  1    ATGGCCAAGGGAAGAGGCAGTGCATCATGGTCGGCTCGAGCCATAGTGACTCTTATGGCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  93   ATGGCCAAGGGAAGAGGCAGTGCATCATGGTCGGCTCGAGCCATAGTGACTCTCATGGCT  152

Query  61   GTGTCAGTGTTGTTGCTTCAAGCTGACTACGTTCAAGCTGCAACTTACACGGTCGGAGAC  120
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  153  GTGTCAGTGTTGTTGCTTCAAGCTGACTACGTTCAAGCTGCAACGTACACGGTCGGTGAC  212

Query  121  TCTGGTGTCTGGACCTTTAACGCTGTGGGTTGGCCTAAAGGCAAACACTTTAGAGCCGGT  180
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  213  TCTGGTATCTGGACCTTTAACGCTGTGGGTTGGCCTAAAGGCAAACACTTTAGAGCCGGC  272

Query  181  GACGTTCTTGTGTTTAACTATAATCCGAGGATGCACAACGTAGTGAAGGTAGATAGTGGA  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  273  GACGTTCTTGTGTTTAACTATAATCCGAGGATGCACAACGTAGTGAAGGTAGATAGCGGA  332

Query  241  AGTTACAACAACTGCCAAACACCGGCAGGGGCGAAAAC-TTACACTTCAGGCAAAGATCG  299
            ||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct  333  AGTTACAACAACTGCAAAACACCGACAGGGGC-AAAACCTTACACTTCAGGCAAAGATCG  391

Query  300  TATAACTTTGTCTAAAGGACAAAACTTCTTCATCTGCAATTTTCCAAACCATTGTGAAAA  359
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| 
Sbjct  392  TATAACTTTGTCTAAAGGACAAAACTTTTTCATCTGCAATTTTCCAAACCATTGCGAAAG  451

Query  360  TGCTATGAAAATCGCAGTCACCGCGGTTTGA  390
             | ||||||||||||||||||||||||||||
Sbjct  452  CGATATGAAAATCGCAGTCACCGCGGTTTGA  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5