BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896248

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44755.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  93.5    2e-18


> AT3G44755.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G46360.1); 
Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16302003-16302731 
FORWARD LENGTH=450
Length=450

 Score = 93.5 bits (50),  Expect = 2e-18
 Identities = 87/104 (84%), Gaps = 5/104 (5%)
 Strand=Plus/Plus

Query  120  GCGGCGGGACCATTCTCTCGATCTGAGAAACCGGTGGTGCATCGCCGTGTTTTTCAGAT-  178
            ||||| ||||| ||| ||||  ||||||||||||||||||||||||||||| ||||| | 
Sbjct  106  GCGGCAGGACCTTTCGCTCGGCCTGAGAAACCGGTGGTGCATCGCCGTGTTCTTCAG-TC  164

Query  179  ATCGCCGTTGTTCCTTTTGTGGTTTGGGCTCTC-GGACTTGTCT  221
            |||| ||||||| |||| | |||  || ||||| ||| ||||||
Sbjct  165  ATCGTCGTTGTTTCTTTGG-GGTGCGGACTCTCCGGA-TTGTCT  206



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5