BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896262
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03060.2 | Symbols: AGL30 | AGAMOUS-like 30 | chr2:901143-90... 1770 0.0
> AT2G03060.2 | Symbols: AGL30 | AGAMOUS-like 30 | chr2:901143-903569
FORWARD LENGTH=1337
Length=1337
Score = 1770 bits (958), Expect = 0.0
Identities = 1078/1132 (95%), Gaps = 23/1132 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGGGTAAAATTGAAGATAAAGAAGTTAGAGAACACAACTGGACGCCAATCTACA 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 ATGGGAAGGGTAAAATTGAAGATAAAGAAGTTAGAGAACACAAATGGACGCCAATCTACA 236
Query 61 TTTGCTAAAAGGAAAAATGGGATCTTGAAAAAGGCTAATGAGCTATCAATTCTTTGTGAC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 237 TTTGCTAAAAGGAAAAATGGGATCTTGAAAAAGGCTAATGAGCTATCTATTCTTTGTGAC 296
Query 121 ATTGATATTGTTCTTCTTATGTTTTCTCCTACTGGCAAGGCTGCAATATGTTGCGGTACA 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 297 ATTGATATTGTTCTTCTTATGTTCTCTCCTACTGGCAAGGCTGCAATATGTTGCGGTACA 356
Query 181 CGAAGTAGCATGGAAGAGGTGATTGCTAAGTTTTCTCAAGTATCACCGCAGGAAAGAACG 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 357 CGAAGTAGCATGGAAGAGGTGATTGCTAAGTTTTCTCAAGTAACACCGCAGGAAAGAACG 416
Query 241 AAAAGGAAGTTCGAGAGTCTTGAAAACTTGAAGAAAACTTTCCAAAAGTTGGATCACGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAAAGGAAGTTCGAGAGTCTTGAAAACTTGAAGAAAACTTTCCAAAAGTTGGATCACGAT 476
Query 301 GTAAATATACGCGAATTTATAGCCTCAAGTAATTCAACAATAGAGGACTTGAGTAATCAA 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 477 GTAAATATACGCGAATTTATAGCCTCAAGTAATTCAACAGTAGAGGACTTGAGTACTCAA 536
Query 361 GCAAGGATTCTGCAAGCTCGGATTTCTGAGATACATGGAAGATTAAGTTATTGGACGGAA 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GCAAGGATTCTGCAGGCTCGGATTTCTGAGATACATGGAAGATTAAGTTATTGGACGGAA 596
Query 421 CCCGATAAGATTAACAACGTTGAACACTTGGGACAGCTCGAAATTTCGATTAGGCAATCC 480
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCAGATAAGATTAACAATGTTGAACACTTGGGACAGCTCGAAATTTCGATTAGGCAATCC 656
Query 481 CTTGACCAATTGCGTGCACATAAGGAACATTTTGGGCAGCAGCAACACGCAATGCAAATA 540
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 657 CTTGATCAATTGCGTGCACACAAGGAACATTTTGGGCAGCAGCAACAGGCAATGCAAATA 716
Query 541 GAAAACGCAAACTTTGTTAAAGATTGGTCAACATGCTCGATGCAAGATGGGATTCAGATT 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAAAACGCAAACTTTGTTAAGGATTGGTCAACATGCTCGATGCAAGATGGGATTCAGATT 776
Query 601 CCTTTAGAACAACAGCTTCAATCTATGTCATGGATTCTTAATAGCAACACCACCAACATT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CCTTTAGAACAACAGCTTCAATCTATGTCATGGATTCTTAATAGCAACACCACCAACATT 836
Query 661 GTCACCGAGGAACACAATTCAATCCCGCAGAGGGAAGTCGAGTGCTCAGCGAGTTCTTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTCACCGAGGAACACAATTCAATCCCGCAGAGGGAAGTCGAGTGCTCAGCGAGTTCTTCA 896
Query 721 TTTGGGAGCTATCCAGGCTACTTTGGAACAGGGAAATCTCCTGAAATTACAATTTCGGGT 780
|| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 897 TTCGGGAGCTATCCAGGCTACTTTGGAACAGGGAAATCTCCTGAAATGACAATTCCGGGT 956
Query 781 CAAGAAACAAGCTTTCTTGATGAACTAAACACCGGACAGCTGAAACCGCAAACAAGCTCG 840
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 957 CAAGAAACAAGCTTTCTTGATGAACTAAACACCGGACAGCTGAAACAGGACACAAGCTCG 1016
Query 841 CAGCAGCAGTTCACTAATAATAATA-T--CACAGCATACAATCCCAATCTGCAGAATGAT 897
||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||
Sbjct 1017 CAGCAGCAGTTCACTAATAATAATAATATCACAGCATACAATCCCAATCTTCACAATGAT 1076
Query 898 CTGAATCATCACCAAACGTTGCCTCCTCCTA-T-T-CCGC---CTC--C----T-C--AG 942
||||||||||||||||||||||||||||| | | || | ||| | | | ||
Sbjct 1077 ATGAATCATCACCAAACGTTGCCTCCTCCTCCTCTTCCTCTTACTCTTCCGCATGCTCAG 1136
Query 943 GTGTATATTCCAATGGCTCAGAGAGAGTACCATATGAATGGATTCTTTGAAGGACCACCA 1002
||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1137 GTGTATATTCCAATGAATCAGAGAGAGTATCATATGAATGGATTCTTTGAAGCACCACCA 1196
Query 1003 CCTGGACT-TTCTGCTTACAACAACAACACCAACCAAACCAGGTTTGGTGGTTCTAGCAG 1061
|||| | | ||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 1197 CCTG-ATTCTTCTGCTTACAACGACAACACCAACCAAACCAGGTTTGGT--T-CTAGCAG 1252
Query 1062 CAACTCCTTGCCTTGCTCAATCTCAATGTTCGACGAATACTTGTTTTCCCAG 1113
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CAGCTCCTTGCCTTGCTCAATCTCAATGTTCGACGAATACTTGTTTTCCCAG 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5