BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896294
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03280.2 | Symbols: | O-fucosyltransferase family protein |... 2309 0.0
AT1G14020.1 | Symbols: | O-fucosyltransferase family protein |... 905 0.0
> AT2G03280.2 | Symbols: | O-fucosyltransferase family protein
| chr2:996088-998295 REVERSE LENGTH=1744
Length=1744
Score = 2309 bits (1250), Expect = 0.0
Identities = 1443/1534 (94%), Gaps = 21/1534 (1%)
Strand=Plus/Plus
Query 9 TAGATCGGAGAGTACTCTGATGCGGAGTGA-T-TACAAGCCTCCTCAGAGTCAAGCAATT 66
|||||||||||||||||||||||||||||| | || ||| |||||| ||||||||| |||
Sbjct 77 TAGATCGGAGAGTACTCTGATGCGGAGTGACTATA-AAG-CTCCTCCGAGTCAAGCTATT 134
Query 67 CCCAAAGCTCGATTACAAGTTTGGTTCTTTAGAGTTTGTTCTTGCATTTTGGTTTGGACT 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 CCCAAAGCTCGATTACAAGTTTGGTTCTTTAGAGTTTGTTCTTGCATTTTGGTTTGGACT 194
Query 127 TGTTTGATTCAGCTCTTTTGGCATTCCCAAATCTTCACTGGTTTAACCAATCAGATTTCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 195 TGTTTGATTCAGCTCTTTTGGCATTCCCAAATCTTCACTGGTTTAACCAATCACATTTCT 254
Query 187 AGATTCTCTCTCCCCGTTGAATCAGTTCCATTACCGCCT-C-C-TCCTCCAAGGAACTAT 243
|||||||||||||| ||| | |||||||||||||| ||| | | |||||||||||| ||
Sbjct 255 AGATTCTCTCTCCCGGTTCAGTCAGTTCCATTACCTCCTCCTCTTCCTCCAAGGAATTAC 314
Query 244 ACAAGTAATGGGATTTTACTAGTGTCTTGTAATGGTGGTTTGAATCAAATGCGTGCAGCG 303
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 315 ACAAGTAATGGAATTTTACTAGTGTCCTGTAATGGCGGTTTGAATCAAATGCGTGCAGCG 374
Query 304 GTTTGTGATATGGTTACTGTTGCTAGGCTATTGAATTTGACTCTTGTTGTTCCTGAGCTT 363
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ATTTGTGATATGGTGACTGTTGCTAGGCTATTGAATTTGACTCTTGTTGTTCCTGAGCTT 434
Query 364 GATAAGAAATCTTTCTGGGCTGATCCAAGGTATATGTTTGTTTTCGCGGGTTTTAA-GAA 422
||||| ||||| |||||||||||| ||||||||||||||| | || | | | || | |
Sbjct 435 GATAAAAAATCATTCTGGGCTGATACAAGGTATATGTTTG-TGTCTC--ATGTCAATG-A 490
Query 423 GT-CT-CATGTCGAT-TTTGTAG-CTAAAGCAATC-TTGGTTTCTGT-CTTTTACAGTGA 476
| || || | | ||||||| ||||||| || || |||||| | ||||||||||||
Sbjct 491 -TCCTACAAG-ATTTGTTTGTAGTTTAAAGCATTCTTTTGTTTCT-TCCTTTTACAGTGA 547
Query 477 CTTTGAGGACATTTTTGATGTAAAGCATTTCATTGATTCGTTAAGAGATGAAGTTAGGAT 536
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CTTTGAGGACATTTTTGATATAAAGCATTTCATTGATTCGTTAAGAGATGAAGTTAGGAT 607
Query 537 CATAAGGAGACTTCCAAAACGATATAGTAAGAAGTATGGATACAAATTGTTCGAAATGCC 596
||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 608 CATAAGGAGACTTCCTAAACGGTATAGTAAGAAGTATGGATTCAAATTGTTCGAAATGCC 667
Query 597 GCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAACAGGTATTGCCGCGATTCAGTAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 668 GCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAACAGGTATTGCCGCGGTTTAGTAA 727
Query 657 ACGTAAAGTTATACATTTCCTTAGGAGTGATACGCGATTGGCTAACAACGGTCTTTCTCT 716
||||||||||||||||||| || ||||||||||||||||||| ||||| |||||||||||
Sbjct 728 ACGTAAAGTTATACATTTCGTTCGGAGTGATACGCGATTGGCGAACAATGGTCTTTCTCT 787
Query 717 TGACCTTCAAAGGCTGAGATGTCGAGTTAATTTTCAAGGATTGAGATTCACTCCGCCGAT 776
||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||| | |||
Sbjct 788 TGACCTTCAAAGGCTGAGATGCCGAGTGAATTTCCAAGGACTGAGATTCACTCCACGGAT 847
Query 777 TGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTGTGGCTTT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTGTGGCTTT 907
Query 837 GCATTTAAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACACATGGTTGTACCGA 896
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 908 GCATTTGAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACTCATGGTTGTACCGA 967
Query 897 GGAAGAAGCCGAAGAACTCaaaaaaaTGAGGTATGCATATCCATGGTGGAGAGAGAAAGA 956
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 968 TGAAGAAGCTGAAGAACTCAAAAAGATGAGGTATGCATATCCATGGTGGAGAGAGAAAGA 1027
Query 957 GATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCCTTGACACCGGAGGAGGCGGT 1016
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1028 GATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCTTTGACACCGGAGGAGGCGGT 1087
Query 1017 TTTGGTCCTTAAAGCATTGGGGTTTCAAAAGGATACACAAATATACATTGCAGCTGGTGA 1076
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1088 TTTGGTTCTTAAAGCATTGGGGTTTCAAAAGGATACACAGATATACATTGCAGCTGGTGA 1147
Query 1077 GATTTATGGTGGTGCAAAGAGATTAGCTCTTCTGAAGGAATCATTTCCACGAATTGTGAA 1136
||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1148 GATTTTTGGTGGTGCAAAGAGATTAGCCCTTCTAAAGGAATCATTTCCACGAATTGTGAA 1207
Query 1137 AAAGGAAATGCTATTAGATCCAACAGAATTGCAACAGTTTCAGAACCATTCATCACAAAT 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1208 AAAGGAAATGCTATTAGATCCAACAGAATTGCAACAGTTTCAGAACCATTCATCTCAAAT 1267
Query 1197 GGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTATTCCTACCTATTATGG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 GGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTATTCCTACCTATTATGG 1327
Query 1257 AAACATGGCAAAAGTTGTTGAAGGTCATCGAAGATATCTCGGGTTTAAGAAAACAATCTT 1316
|||||||||||||||||| ||||||||||| || || || ||||||||||||||||||||
Sbjct 1328 AAACATGGCAAAAGTTGTCGAAGGTCATCGGAGGTACCTTGGGTTTAAGAAAACAATCTT 1387
Query 1317 GCTAGACCGGAAGAGACTTGTGGAGCTTTTGGACTTGCATTACAACAAAACGCTCTCTTG 1376
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1388 GCTAGACCGGAAGAGACTTGTGGAGCTTTTAGACTTGCATAACAACAAAACGCTCTCTTG 1447
Query 1377 GGATCAGTTTGCAGTAGCTGTCAAGGAAACTCATCAAGGACGACGAATGGGAGAACCAAC 1436
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1448 GGATCAGTTTGCAGTAGCTGTCAAGGATGCCCATCAAGGACGACGAATGGGAGAACCAAC 1507
Query 1437 ACATCGGAAAGTTATCTCCGATAGACCGAAGGAAGAAGATTACTTCTATGCCAATCCTCA 1496
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1508 ACATCGGAAAGTTATCTCCGTTAGACCGAAGGAAGAAGATTACTTCTATGCCAATCCTCA 1567
Query 1497 AGAATGTATCAGTGAAAATGATATAGTTCACTAA 1530
||||||||||||| |||||||||||| |||||||
Sbjct 1568 AGAATGTATCAGTTAAAATGATATAGATCACTAA 1601
> AT1G14020.1 | Symbols: | O-fucosyltransferase family protein
| chr1:4802720-4805375 FORWARD LENGTH=1974
Length=1974
Score = 905 bits (490), Expect = 0.0
Identities = 865/1043 (83%), Gaps = 37/1043 (4%)
Strand=Plus/Plus
Query 478 TTTGAGGACATTTTTGATGTAAAG-CATTTCATTGATTCGTTAAGAGATGAAGTTAGGAT 536
|||||||| ||||||||||| || |||||||||||||| ||||||||||||||| ||||
Sbjct 631 TTTGAGGATATTTTTGATGT-GAGACATTTCATTGATTCATTAAGAGATGAAGTTCGGAT 689
Query 537 CATAAGGAGACTTCCAAAACGATATAGTAAG-AAGTATGGATA-CAAATTGTTCGAAATG 594
| ||||||| ||||| ||||| | |||| || ||||||||||| |||| |||||||||||
Sbjct 690 CTTAAGGAGGCTTCCTAAACGGTTTAGT-AGAAAGTATGGATATCAAA-TGTTCGAAATG 747
Query 595 CCGCCTGTGAGCTGGTCCAACGACAAATATTACTTGCAA-CAGGTATTGCCGCGATTCAG 653
|| |||||||||||||| | || |||||||||||| || ||||||||||| | |||||
Sbjct 748 CCTCCTGTGAGCTGGTCTGATGAAAAATATTACTTG-AAGCAGGTATTGCCTCTCTTCAG 806
Query 654 TAAACGTAAAGTTATACATTTCCTTAGGAGTGATACGCGATTGGCTAACAACGGTCTTTC 713
|| | ||||||| |||| ||| ||||| |||||| || |||| ||||| |||||| |
Sbjct 807 CAAGCATAAAGTTGTACACTTCAATAGGACTGATACCCGCCTGGCAAACAATGGTCTTCC 866
Query 714 TCTTGAC-CTTCAAAGGCTGAGATGTCGAGTTAATTTTCAAGGA-TTGAGATTCACTCCG 771
| | | || || |||| || || || || |||||||| ||| | || ||||||||
Sbjct 867 GC-TCTCTCTCCAGTGGCTCAGGTGCCGGGTGAATTTTCAGGGACTAAAG-TTCACTCCA 924
Query 772 CCGATTGAGGCTTTGGGATCAAAGTTAGTTCGGATTCTTCAACAAAGAGGGTCTTTTGTG 831
| | |||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||
Sbjct 925 CAGCTTGAGGCTTTGGGATCTAAGTTAGTTCGGATTCTACAACAAAGAGGGCCATTTGTG 984
Query 832 GCTTTGCATTTAAGATATGAGATGGACATGTTGGCTTTCTCTGGTTGCACACATGGTTGT 891
||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 985 GCTTTGCATCTGAGATATGAGATGGACATGTTAGCTTTCTCTGGCTGCACTCATGGTTGC 1044
Query 892 ACCGAGGAAGAAGCCGAAGAACTCaaaaaa-aTGAGGTATGCATATCCATGGTGGAGAGA 950
|| ||||||||||| ||||| || |||||| |||||||| ||||||| |||||||||||
Sbjct 1045 ACTGAGGAAGAAGCGGAAGAGCT-AAAAAAGATGAGGTACACATATCCCTGGTGGAGAGA 1103
Query 951 GAAAGAGATAGTTTCAGAAGAAAGGAGAGTGCAAGGACTGTGTCCCTTGACACCGGAGGA 1010
||| |||||||| ||||| || ||||| | |||||| |||||||| ||||| || |||||
Sbjct 1104 GAAGGAGATAGTCTCAGAGGAGAGGAGGGCGCAAGGGCTGTGTCCTTTGACGCCAGAGGA 1163
Query 1011 GGCGGTTTTGGTCCTT-AAAGCATTGGGGTTTCA-AAAGGATACACAAATATACATTGCA 1068
|| || ||||| || ||||| ||||| ||| | ||| ||||||| ||||||||||||
Sbjct 1164 GGTGGCCTTGGT-ATTAAAAGCGTTGGGATTTGAGAAA-AATACACAGATATACATTGCA 1221
Query 1069 GCTGGTGAGATTTATGGT-G-GTGCAAAGAGATTAGCTCTTCTGAAGG-AATCATTTCC- 1124
||||||||||||||||| | | ||| ||| | | | | | | |||| || |||| ||
Sbjct 1222 GCTGGTGAGATTTATGGGAGCGAGCATAGAC-T-ATC-CGTGTTAAGGGAAGCATTCCCG 1278
Query 1125 ACGAATTGTGAAA-AAGGAAATGCTATTAGA-TCCAACAGAATTGCAACAGTTTCAGAAC 1182
| ||||||| ||| |||||||||||||| || || | |||| |||||||||||||||||
Sbjct 1279 A-GAATTGT-AAAGAAGGAAATGCTATTGGAGTC-AGCAGAGCTGCAACAGTTTCAGAAC 1335
Query 1183 CATTCATCACAAATGGCAGCTCTAGATTTCATAGTATCTGTAGCCAGCAACACTTTTATT 1242
||||| || |||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1336 CATTCGTCTCAAATGGCTGCTCTAGATTTCATGGTATCTGTGGCCAGCAACACTTTTATT 1395
Query 1243 CCTACCTATTATGGAAACATGGCAAAAGTTGTTGAAGGTCATCGAAGATATCTCGGGTTT 1302
||||| ||| ||||||||||||||||||| || ||||||||||| ||||| || || | |
Sbjct 1396 CCTACGTATGATGGAAACATGGCAAAAGTCGTGGAAGGTCATCGTAGATACCTTGGATAT 1455
Query 1303 AAGAAAACAATCTTGCTAGACCGGAAGAGACTTGTGGAGCTTTTGGACTTGCATTACAAC 1362
||||| |||||| |||| ||||| |||||||| |||||||| | ||||| ||| |||||
Sbjct 1456 AAGAAGACAATCCTGCTTGACCGTAAGAGACTCGTGGAGCTACTAGACTTACATCACAAC 1515
Query 1363 AAAACGCTCTCTTGGGATCAGTTTGCAGTAGCTGTCAAGGAAACTCATCA-AGGACGACG 1421
|| || ||| | |||||||||||||||||||| ||||||||| | ||| | || |||| |
Sbjct 1516 AAGACCCTCACGTGGGATCAGTTTGCAGTAGCAGTCAAGGAAGCCCATGAGAG-ACGA-G 1573
Query 1422 AATGGGAGAACCAACACATCGGAA-AGTTATCTCCGATAGACCGAAGGAAGAAGATTACT 1480
| || || ||| || ||||| || ||| ||||| || | ||| ||||| ||||||||||
Sbjct 1574 CA-GG-AGCACCTACTCATCG-AAGAGTAATCTCTGACAAACCTAAGGAGGAAGATTACT 1630
Query 1481 TCTATGCCAATCCTCAAGAATGT 1503
|||| || |||||||||||||||
Sbjct 1631 TCTACGCAAATCCTCAAGAATGT 1653
Score = 255 bits (138), Expect = 7e-67
Identities = 288/355 (81%), Gaps = 31/355 (9%)
Strand=Plus/Plus
Query 61 GCAATTCCCAAAG-CTCGAT-TACAAGTTTGGTTCTTTAGAGTTTGTTCTTGCATTTTGG 118
||| || || ||| |||| | ||||||| |||||| |||||||||| || |||||||||
Sbjct 274 GCAGTT-CCGAAGCCTCG-TGTACAAGTATGGTTCGTTAGAGTTTGCTCCAGCATTTTGG 331
Query 119 TTTGGACTTGTTTGATTCAGC---T------C--T----TTTGGCATTCCCAAATCTTCA 163
||||||| |||||| |||||| | | | |||||||||||| |||||||
Sbjct 332 TTTGGACGTGTTTGGTTCAGCTTTTCGCCGCCGGTGAGCTTTGGCATTCCCGGATCTTCA 391
Query 164 CTGGTTTAACCAATCAGATTTCTAGATTCTCTCTCCCC-GTTGAATCAGTTCCATT---A 219
||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
Sbjct 392 CTGGTTTAACCAATCAGATTTCTAGATTCTCAG-CCCCTGTTGAGCCAGTTCCATTGCCA 450
Query 220 CCGCCTC--C-TCCTCCAAGGAACTATACAAGTAATGGGATTTTACTAGTGTCTTGTAAT 276
|| |||| | |||||| ||||| |||||||| ||||| ||| |||| || || ||||||
Sbjct 451 CCTCCTCTACCTCCTCCGAGGAATTATACAAGCAATGGTATTCTACTTGTATCCTGTAAT 510
Query 277 GGTGGTTTGAATCAAATGCG-TGCAGCGGTTTGTGATATGGTTACTGTTGCTAGGCTATT 335
||||| |||||||||||||| | | ||| | ||||||||||| ||||||||| || ||||
Sbjct 511 GGTGGATTGAATCAAATGCGATCC-GCGATATGTGATATGGTGACTGTTGCTCGGTTATT 569
Query 336 GAATTTGACTCTTGTTGTTCCTGAGCTTGATAAGAA-ATCTTTCTGGGCTGATCC 389
|||| | ||||| |||||||| |||||||| || || ||||||||||||||||||
Sbjct 570 GAATCTCACTCTCGTTGTTCCAGAGCTTGACAA-AACATCTTTCTGGGCTGATCC 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75501619680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5