BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896296
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03300.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 876 0.0
AT2G03030.1 | Symbols: | Toll-Interleukin-Resistance (TIR) dom... 861 0.0
> AT2G03300.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr2:1003468-1004222 REVERSE LENGTH=612
Length=612
Score = 876 bits (474), Expect = 0.0
Identities = 568/614 (93%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 1 ATGACATTCTTCTCTCCCACTCAGGTGTTCTTGAACTACCGGGGAGAGCAACTGCGTTAC 60
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
Sbjct 1 ATGACATTCTTCTCTCCCACTCAGGTGTTTTTGAACTACAGGGGAGAACAACTGCGTCGC 60
Query 61 AGCTTCGTGAGCCACCTCGTTGATGCTTTTGAAAGGAATGAGGTAAACTTCTTCGTAGAC 120
|||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||
Sbjct 61 AGCTTCGTGAGCCACCTCATTGATGCCTTTGAAAGGAATGAGATCAACTTCTTCGTAGAC 120
Query 121 AAATACGAGCAGAGAGGCAAAGACCTCAAAAATCTCTTTGTAAGGATCGAAGAATCGAGG 180
|||||||| |||||||||||||||||||||||||||||| | |||||| |||| |||| |
Sbjct 121 AAATACGAACAGAGAGGCAAAGACCTCAAAAATCTCTTTCTTAGGATCCAAGAGTCGAAG 180
Query 181 ATCGCGCTGGCCATCTTCTCTACGAGATACACCGAGTCGAGCTGGTGTATGGATGAGTTG 240
|||||||| ||||||||||| || |||||||| ||||| |||||||||||||||||||||
Sbjct 181 ATCGCGCTTGCCATCTTCTCAACCAGATACACGGAGTCAAGCTGGTGTATGGATGAGTTG 240
Query 241 GTGAAAATGAAGAAACTTGCGGATAAAAGAAAGCTCCATGTTATTCCAATCTTCTACAAA 300
||||| || ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 241 GTGAAGATAAAGAAACTTGCTGATAAAAGAAAGCTCCATGTCATTCCAATTTTCTACAAG 300
Query 301 GTGAAGGTAGATGACGTTAGAAAACAGACAGGTGAGTTTGGCGACAACTTTTGGACGCTC 360
||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct 301 GTGAAGGTAGAAGACGTTCGAAAACAGACAGGTGAGTTTGGTGACAACTTCTGGACGCTG 360
Query 361 GCAAAGGTTTCAAGTGGAGATCAGATCAAGAAATGGAAAGAAGCCTTGGAATGTATCTCC 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GCAAAGGTTTCAAGTGGTGATCAGATCAAGAAATGGAAAGAAGCCTTGGAATGTATCCCC 420
Query 421 AACAAGATGGGTTTGTCGTTGGGAGACAAGAGCT-CTGAAGCCGATTTTGTCAAGGAAGT 479
|||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||
Sbjct 421 AACAAGATGGGTTTGTCGTTGGGAGACAAGAG-TGATGAAGCAGATTTCATCAAGGAAGT 479
Query 480 TGTTAAGGCGGTTCAGAGTGTTGTAGCAGTC-ATTGGACTTGAGGAAGGAGAGAATCATT 538
|||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||
Sbjct 480 TGTTAAGGCGGTTCAGTGTGTTGTAGCA-ACGATTGGACTTGAGGAAGAAGAGAATCATT 538
Query 539 TTGGGAAAAAGAAGAGAAAGGATTGCAAATGTGAACTTCCTGATTTCAAGAAAAGCAGAA 598
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 539 TTGGGAAAAAGAAGAGAAAGGATTGCAAATGTGAGCTTCCTGATTTGAAGAAAAGCAGAA 598
Query 599 CCAAAAAGTTGTGA 612
||||||||||||||
Sbjct 599 CCAAAAAGTTGTGA 612
> AT2G03030.1 | Symbols: | Toll-Interleukin-Resistance (TIR) domain
family protein | chr2:889764-890520 FORWARD LENGTH=615
Length=615
Score = 861 bits (466), Expect = 0.0
Identities = 567/616 (92%), Gaps = 5/616 (1%)
Strand=Plus/Plus
Query 1 ATGACATTCTTCTCTCCCACTCAGGTGTTCTTGAACTACCGGGGAGAGCAACTGCGTTAC 60
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
Sbjct 1 ATGACATTCTTCTCTCCCACTCAGGTGTTTTTGAACTACAGGGGAGAACAACTGCGTCGC 60
Query 61 AGCTTCGTGAGCCACCTCGTTGATGCTTTTGAAAGGAATGAGGTAAACTTCTTCGTAGAC 120
|||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||
Sbjct 61 AGCTTCGTGAGCCACCTCATTGATGCCTTTGAAAGGAATGAGATCAACTTCTTCGTAGAC 120
Query 121 AAATACGAGCAGAGAGGCAAAGACCTCAAAAATCTCTTTGTAAGGATCGAAGAATCGAGG 180
|||||||| |||||||||||||||||||||||||||||| | |||||| |||| |||| |
Sbjct 121 AAATACGAACAGAGAGGCAAAGACCTCAAAAATCTCTTTCTTAGGATCCAAGAGTCGAAG 180
Query 181 ATCGCGCTGGCCATCTTCTCTACGAGATACACCGAGTCGAGCTGGTGTATGGATGAGTTG 240
|||||||| ||||||||||| || |||||||| ||||| ||||||||| |||||||||||
Sbjct 181 ATCGCGCTTGCCATCTTCTCAACCAGATACACGGAGTCAAGCTGGTGTTTGGATGAGTTG 240
Query 241 GTGAAAATGAAGAAACTTGCGGATAAAAGAAAGCTCCATGTTATTCCAATCTTCTACAAA 300
||||| || ||||||||||| ||||||| ||| |||||||| |||||||| ||||||||
Sbjct 241 GTGAAGATAAAGAAACTTGCTGATAAAAAAAAACTCCATGTCATTCCAATTTTCTACAAG 300
Query 301 GTGAAGGTAGATGACGTTAGAAAACAGACAGGTGAGTTTGGCGACAACTTTTGGACGCTC 360
||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct 301 GTGAAGGTAGAAGACGTTCGAAAACAGACAGGTGAGTTTGGTGACAACTTCTGGACGCTG 360
Query 361 GCAAAGGTTTCAAGTGGAGATCAGATCAAGAAATGGAAAGAAGCCTTGGAATGTATCTCC 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GCAAAGGTTTCAAGTGGTGATCAGATCAAGAAATGGAAAGAAGCCTTGGAATGTATCCCC 420
Query 421 AACAAGATGGGTTTGTCGTTGGGAGACAAGAGCTCTGAAGCCGATTTTGTCAAGGAAGTT 480
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 421 AACAAGATGGGTTTGTCGTTGGGAGACAAGAGTTCTGAAGCAGATTTCATCAAGGAAGTT 480
Query 481 GTTAAGGCGGTTCAGAGTGTTGTAGCAGTC-ATTGGACTTGAGGAAG--G-AGAGAATCA 536
||||||||||||||| ||||||||||| | |||||||||||||||| | |||||||||
Sbjct 481 GTTAAGGCGGTTCAGTGTGTTGTAGCA-ACGATTGGACTTGAGGAAGAAGAAGAGAATCA 539
Query 537 TTTTGGGAAAAAGAAGAGAAAGGATTGCAAATGTGAACTTCCTGATTTCAAGAAAAGCAG 596
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 540 TTTTGGGAAAAAGAAGAGAAAGGATTGCAAATGTGAGCTTCCTGATTTGAAGAAAAGCAG 599
Query 597 AACCAAAAAGTTGTGA 612
||||||||||||||||
Sbjct 600 AACCAAAAAGTTGTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5