BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896301
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23100.1 | Symbols: RML1, PAD2, GSH1, CAD2, ATECS1, GSHA | g... 787 0.0
> AT4G23100.1 | Symbols: RML1, PAD2, GSH1, CAD2, ATECS1, GSHA |
glutamate-cysteine ligase | chr4:12103161-12107299 REVERSE
LENGTH=2055
Length=2055
Score = 787 bits (426), Expect = 0.0
Identities = 1046/1338 (78%), Gaps = 72/1338 (5%)
Strand=Plus/Plus
Query 44 TGACCAAAGAAGATCTGATTGCCTATTTTGCTTCTGGATGCAAACCAAAGG--AAATGTG 101
|||| | ||| ||||| ||||||||| |||| |||||||||||| |||||| |||| |
Sbjct 455 TGACGAGAGAGGATCTCATTGCCTATCTTGCCTCTGGATGCAAAACAAAGGACAAATAT- 513
Query 102 GAGAATAGGCACAGAACATGAGAAATTTTGTTTCGAGGTCAAGACTTTGCGCCCTATAAA 161
|||||||| |||||||||||||||||| |||| |||||||| |||||||||||||| ||
Sbjct 514 -AGAATAGGTACAGAACATGAGAAATTTGGTTTTGAGGTCAATACTTTGCGCCCTATGAA 572
Query 162 ATTTGAACAAATAACTGCA-CTGCTTAATGGTATTGCCGAGAGATATGATTGGGATAAGG 220
| ||| |||||| | | | || ||||||||||| || || |||| ||| ||||| || |
Sbjct 573 GTATGATCAAATAGCCG-AGCTTCTTAATGGTATCGCTGAAAGATTTGAATGGGAAAAAG 631
Query 221 TGATGG-AGAAAGA-AAGAATCATTGGTTTGAAACAAGG-AAGCAAAAGCATTTCACTAG 277
| |||| || || ||| ||||||||| |||| || || |||| ||||||||||||| |
Sbjct 632 TAATGGAAG-GTGACAAG-ATCATTGGTCTGAAGCAGGGAAAGC-AAAGCATTTCACTTG 688
Query 278 AACCAGGAGGCCAACTAGAGCTAAGTGGGGCACCTCTAGAGACGCTGCACCAAACTTGTG 337
|||| || || || | ||||| ||||| |||||||| ||||| |||| ||||||||||
Sbjct 689 AACCTGGGGGTCAGTTCGAGCTTAGTGGTGCACCTCTTGAGACTTTGCATCAAACTTGTG 748
Query 338 ATG-AGATCCGTTCACATCTCCACCAAGTGAAAA-CTGTTGCTGAAGAATTGGAAATTGG 395
|| || || ||||||||| | || || |||| | |||||||| ||| ||| ||||||
Sbjct 749 CTGAAG-TCAATTCACATCTTTATCAGGT-AAAAGCAGTTGCTGAGGAAATGGGAATTGG 806
Query 396 TTTCTTAGGAATTGGCTAT-GAACCCAAA--GCTAGTCTCGAGGATGTAACCATTGTGCC 452
||||||||||||||||| | | |||||| || ||| |||||| || |||| ||||
Sbjct 807 TTTCTTAGGAATTGGCT-TCCAGCCCAAATGGC--GTCGGGAGGATATACCCATCATGCC 863
Query 453 CAAGAGAAGGTTTGACTTTATAACAGACCACTTAGCC---AG-AGCCACCACATCAGGAC 508
||| | || | ||| |||| | | || || | ||| || | ||| | | || |
Sbjct 864 AAAGGGGAGATACGACATTATGAGAAACTACAT-GCCGAAAGTTGGTACC-C-T-TGGTC 919
Query 509 CTGACGTGATGTTCAGAACGTGTACTGTTCAGGTCAATCTAGACTATAGCTCAGAAACCG 568
||| ||||| || ||||||||||||||||||| ||||| || | |||||||||| | |
Sbjct 920 TTGATATGATGCTCCGAACGTGTACTGTTCAGGTTAATCTGGATTTTAGCTCAGAAGCTG 979
Query 569 ATATGATCAGGAAGTTTCGCGCTAGTCTAGCTTTGCAACCTATCGCTACAGCTATATTCG 628
||||||||||||||||||| ||| |||| ||||| |||||||| || || ||| |||| |
Sbjct 980 ATATGATCAGGAAGTTTCGTGCTGGTCTTGCTTTACAACCTATAGCAACGGCTCTATTTG 1039
Query 629 CAAATTCCCCTTTT--AGTAATGGAAAACCAAATGGGTTTTTGAGCGTGAGGAGTCAGCT 686
| |||||||||||| || || ||||| ||||| || ||| | ||| |||| || || |
Sbjct 1040 CGAATTCCCCTTTTACAG-AA-GGAAAGCCAAACGGATTTCTCAGCATGAGAAGCCA-C- 1095
Query 687 ATAT--ACAGATTCTGATAAGAACCGCACAGGGATGATACCTTTTGTTTTCGATGACTCA 744
|||| ||||| |||| ||| |||||||||| ||| |||| |||||||||||||||||
Sbjct 1096 ATATGGACAGACACTGACAAGGACCGCACAGGAATGCTACCATTTGTTTTCGATGACTCT 1155
Query 745 TTTGGGTTTGAGCGGTATGTCGAATACGCACTTGATATTCCAATGTTGTTCTTATTTC-G 803
||||||||||||| |||||| || |||||||| ||| | || |||| || | | | |
Sbjct 1156 TTTGGGTTTGAGCAGTATGTTGACTACGCACTCGATGTCCCTATGTACTT-TGCCTACAG 1214
Query 804 AAACGAA-AGCTATC-TCGACTGTGGAGGAATGACATTTCGGGATTTCATGTCCGGGAAA 861
||| ||| | || | |||||||| ||||||||||||||| | ||| || | |||||
Sbjct 1215 AAA-GAACAAATA-CATCGACTGTACTGGAATGACATTTCGGCAATTCTTG-GCTGGAAA 1271
Query 862 ATTTCTC-ATCTCTCTAATGAACAACCTAACAT-TAAGGACTGGGAACTTCAT-TTAGGA 918
| ||| | |||| || ||||| ||| ||| ||| || |||||| ||| | | |
Sbjct 1272 ACTTCCCTGTCTCCCTGGTGAACTGCCT-TCATATAATGATTGGGAAAACCATCTGA-CA 1329
Query 919 GCAATATAT-CCAGAGGTCCGACTAAAGAGATACTTGGAGATGAGAGGTGCTGATGGAGG 977
|||||| | |||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 1330 ACAATAT-TCCCAGAGGTTCGGTTGAAGAGATACTTGGAGATGAGAGGTGCTGATGGAGG 1388
Query 978 TCCCTTGGAC-ATGTTATGTGCCCTACCAGCTTTCTGGGTGGGTTTGCTATACGATGAGG 1036
||||| ||| | | | |||||||| |||||||||||||||||||| |||| ||||| |
Sbjct 1389 TCCCT-GGAGGAGGCTGTGTGCCCTGCCAGCTTTCTGGGTGGGTTTATTATATGATGATG 1447
Query 1037 ACTC-TCTCCAAACTGTTCTCGATATGATC-GATGATTGGACTCCTGAAGAAAGGGAGAT 1094
| | ||||||| || | || ||| ||| | | ||| |||||||| | ||| || |||||
Sbjct 1448 A-TAGTCTCCAAGCTATCCTGGATCTGA-CAGCTGACTGGACTCCAGCAGAGAGAGAGAT 1505
Query 1095 GCTTAGGACTCAA-GTTCCAATCACTGGCCTAAAGACAA-TGTTTAGAGATAGGCCT-TT 1151
||| |||| ||| || ||| | |||||| ||||||| | ||||| ||| || | ||
Sbjct 1506 GCTAAGGAA-CAAAGTCCCAGTTACTGGCTTAAAGACTCCT-TTTAGGGAT-GGTTTGTT 1562
Query 1152 AAAACATGTAGCAGAAGATGTCCT-AAAGCTTGCAAAGGATGGTTTGGAGCGTC-GAGGG 1209
||| ||||| || ||||||||||| ||| || |||||||||||||| ||||| | ||||
Sbjct 1563 AAAGCATGTCGCTGAAGATGTCCTGAAA-CTCGCAAAGGATGGTTTAGAGCG-CAGAGGC 1620
Query 1210 TACAATGAAACCGGTTTCTTGAAAGCTCTCGCCGAGGTGGTTGGAACAGGGGTTACGCCT 1269
||||| ||| ||||||||||||| || ||| || ||||| ||||||| |||||||||
Sbjct 1621 TACAAGGAAGCCGGTTTCTTGAACGCAGTCGATGAAGTGGTCAGAACAGGAGTTACGCCT 1680
Query 1270 GCAGAGAAGCTCTTGGAG-TCGTACAATGGAGACTGGGGACAAAACATAGATTCTGTGTT 1328
|| ||||||||||||||| | |||||||||||| |||||||||| | ||||| | |||||
Sbjct 1681 GCGGAGAAGCTCTTGGAGAT-GTACAATGGAGAATGGGGACAAAGCGTAGATCCCGTGTT 1739
Query 1329 CCAGG-GACTGCGGTACT 1345
| | | | |||| |||||
Sbjct 1740 CGAAGAG-CTGCTGTACT 1756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5